Pelagovum pacificum: I8N54_06420
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Entry
I8N54_06420 CDS
T06971
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ppaf
Pelagovum pacificum
Pathway
ppaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8N54_06420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppaf03019
]
I8N54_06420
Messenger RNA biogenesis [BR:
ppaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I8N54_06420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QQA44208
LinkDB
All DBs
Position
1273790..1275463
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AA seq
557 aa
AA seq
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MSGDRLIYLPLGGAGEIGMNAYVYGYGPQDKERLIVVDLGVTFPDMDGTPGVDLIMPDIT
WLEERKDRIEGIFITHAHEDHIGAVGHLQSRLGGIPVHARAFTANLARRKLEEYGVVEPQ
AVTTASAWPEMIEAGPFKVGFAPISHSIPESAGLVIDTPAGRVVHSGDFKTDPTPVIGEP
FDPVMWGEIAKGGVKALVCDSTNVFSPHEGRSELSIGPEIEQLMSSASGMVVATTFASNV
ARLKTLAEAAQRAGRSICLLGRAMRRMVEAAVETGILTDFPSTIAPEDAVQIPRENVMLL
VTGSQGERRAASAQLAQGKYNGIELKEGDTFLFSSKTIPGNERGVIRIMNQLSEKGVEVI
DDSSGRYHVSGHANRPDLQKMHQIIRPQILVPMHGEHRHLREHTKLGEEGGLQSILAVNG
TMVDLTGNAPRVAEFIETGRTYLDGSVQVGALDGIVRDRIRMALNGHVTVTLIIDEEGEP
LGEPWCEIMGLAETGVSRASLVEVLEEDLNQYLMRAGKKTLADDDALEKELRTITRRTAQ
GEIGKKPEVTVVISRLA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgagcggagacagactgatctacctccccctcggaggcgcgggggagatcggcatgaac
gcctacgtctacggctacgggccgcaggacaaggagcgtctcatcgtcgtcgacctcggc
gtgaccttccccgacatggacggcacgcccggcgtcgatctcatcatgcccgacatcacc
tggctcgaagagcgcaaggaccggatcgagggcatcttcatcacccacgcgcacgaggat
cacatcggagcggtcggccacctgcaaagtcggctcggcggcattcccgttcacgcgcgg
gccttcactgccaacctcgcgcggcgcaagctcgaggaatacggcgtggtcgagccgcag
gcggtcacgaccgcctctgcctggcccgagatgatcgaggcggggccgttcaaggtcggc
ttcgcgccgatctcgcactcgatccccgaaagcgcgggtctggtgatcgacacgcccgcc
gggcgcgtcgtccattccggcgacttcaagaccgacccgacgccggtgatcggcgagccc
ttcgaccccgtcatgtggggcgagatcgccaaggggggggtgaaggcgctggtctgcgac
agcaccaacgtcttctcgccgcacgagggccggtcggagctgtccatcggccccgagatc
gagcagctgatgtcgagcgcgagcggcatggtcgtcgcgacgaccttcgcctccaacgtc
gcccggctgaagacgctggccgaggccgcgcagcgcgcgggccggtcgatctgcctgctc
ggccgcgccatgcggcgtatggtcgaggcggcggtcgagacggggatcctcaccgacttc
ccctcgaccatcgcgcccgaggatgcggtgcagatcccgcgcgagaacgtcatgctgctg
gtcaccggcagccagggcgagcggcgcgcggcctccgcgcagctggcgcagggcaagtac
aacggaatcgagctgaaggagggggacacgttcctgttctcctccaagaccattcccggc
aatgagcggggcgtgatccggatcatgaaccagctctccgagaagggggtggaggtcatc
gacgacagctcgggccgctaccacgtctcgggccacgccaaccggccggacttgcagaag
atgcaccagatcatccggccgcaaatcctcgtgcccatgcatggtgagcaccgccacctg
cgcgaacataccaagcttggcgaagagggcggattgcagagcatcctcgcggtgaacggc
acgatggtcgacctcaccggcaacgccccccgggtggccgagttcatcgagactgggcgc
acctacctcgacgggtcggtgcaggtcggtgcgctcgatgggatcgtccgcgaccggatc
cgcatggcgctgaacggccacgtgaccgtgacgctcatcatcgacgaggaaggcgagccg
cttggcgagccgtggtgcgagatcatggggctggccgagaccggcgtatcccgcgcctcg
ctcgtcgaggttctggaagaggacctgaaccagtacctgatgcgggccggcaagaagacg
ctggcggacgacgatgcgctggagaaggagctgcggaccatcacccgccgcaccgcgcag
ggcgagatcggcaagaagccggaagtcacggtcgtcatcagccggctcgcctga
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