Pelagovum pacificum: I8N54_08555
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Entry
I8N54_08555 CDS
T06971
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ppaf
Pelagovum pacificum
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppaf03016
]
I8N54_08555 (thpR)
Enzymes [BR:
ppaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
I8N54_08555 (thpR)
Transfer RNA biogenesis [BR:
ppaf03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
I8N54_08555 (thpR)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Acb1
Corona_NS2A
AKAP7_NLS
DUF2267
Motif
Other DBs
NCBI-ProteinID:
QQA44602
LinkDB
All DBs
Position
1733382..1733924
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AA seq
180 aa
AA seq
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MRAFVSIDLPPEETAILAALQERLPFGRRADPDTFHVTLAFLGEDVAEEAVETLHEELIA
LRLPDFPLEVQGVSTLGAPAVLMADVIASDPLVTLHARVASACRRAGITLDRRRFRPHVT
LARFRRDLSAHDLDRLTRFLESEARFRLDPFNAGSFALWQSMLTHDGPVHEELARYPLAR
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
gtgagagcattcgtttccatcgacctcccgcctgaggagacggcgatcctcgcggctctg
caggagcggctgcctttcgggcggcgcgccgatccggataccttccacgtcacgcttgcc
tttctgggtgaggacgtggcggaggaggccgtcgagacgctgcatgaagagctgatcgct
ctgcgcctgccggatttcccgctggaggtgcagggagtctcgacgctcggcgcgccagcg
gtgctgatggccgatgtcatcgcctccgatccgctggtgaccttgcacgctcgtgttgcc
tctgcctgccggcgcgcggggatcacgctggaccgccggcggttccgcccgcacgtgacg
cttgcccggtttcggcgcgatctgtcggcccacgacctcgaccggctgacccggttcctc
gagtccgaggcgcgcttccgcctcgacccgttcaacgcgggcagcttcgcgctctggcag
tcgatgctgacccatgatgggccggtgcacgaggagctcgcccgctaccctctggcgcgc
tga
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