Pelagovum pacificum: I8N54_10080
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Entry
I8N54_10080 CDS
T06971
Symbol
rimK
Name
(GenBank) 30S ribosomal protein S6--L-glutamate ligase
KO
K05844
ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
Organism
ppaf
Pelagovum pacificum
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppaf03009
]
I8N54_10080 (rimK)
Ribosome biogenesis [BR:
ppaf03009
]
Prokaryotic type
ribosomal protein modification factors
I8N54_10080 (rimK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RimK
Rimk_N
Zn_protease
GSH-S_ATP
ATP-grasp_3
ATPgrasp_ST
R2K_3
LysX_preATP_grasp
ATP-grasp
GARS_A
ATPgrasp_Ter
Motif
Other DBs
NCBI-ProteinID:
QQA41181
LinkDB
All DBs
Position
2051779..2053197
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AA seq
472 aa
AA seq
DB search
MSDTTDDSFIRLGWEEWLGLPDLGLPTLRAKVDTGAKTSALHAFDIETFGSSRAPKVRFA
VHPLPGQDHLSIPCSATLIDRREVTSSNGETEMRYVIRTMLDVGEDQQWPIDITLTDRAT
MNSRMLLGRQALREDCVVVPAEKLLRPERSFDVYTAKKIRQTAPNRALRIAVLSREPNNY
STRRLVEEGDRRGHTVEVIDTTRCYMAINSLAPEVHYDGKRLPRYDAVIPRIGASITPYG
TAVVRQFETLGTYCVNGSEGITASRDKLHAHQVLARHRIGMPTTAFAASPKDTNNLIGLV
GTAPLIVKLLESTQGKGVVMAETKKAAESVIDAFRGLRANFLVQQFVKEAAGEDIRCFVI
AGKVVASMRRKAAGDDFRSNLHRGGTAESVRITKEERTAAVRAARAFGLNLAGVDLLRSN
DGPKILEVNSSPGLEGIEGASKKNLAGMLYDQIEQQVRPTPLKQSRVSGAKG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataccacagacgattccttcatccgtctcggctgggaggagtggctcggtctt
cccgatctcggccttccgaccctcagggcgaaggtggacacaggcgcgaagacttcggcc
ctccacgctttcgacatcgagacgttcggatcgtcgcgcgcgccgaaggtgcgcttcgcc
gtgcatccgcttcccggccaggaccacctctcgatcccctgctcggccacgctgatcgac
cgccgcgaggtgacgagcagcaacggcgagacggagatgcgctatgtcatccgcacgatg
ctcgacgtcggcgaagaccagcaatggccgatcgacatcacgctgaccgaccgggcgacg
atgaactcccggatgcttctcggccggcaggcgctccgcgaagattgcgtcgtggttccg
gcggagaaactgctccgccccgagcgcagcttcgacgtctacacggccaagaagatccgc
cagaccgcgccgaaccgcgcgctgcgtatcgccgtcctgtcgcgcgagccgaacaattat
tcgacccgccgactggtggaggaaggcgatcggcgcggccacacggtcgaggtcatcgac
acgacgcgctgctacatggcgatcaacagcctcgcaccggaagtgcattacgatggcaag
cgcctgccccgatatgacgcggtcatcccccgcataggcgcttcgatcaccccctatggc
accgcggtcgtgcgccagttcgagacgctcggcacctattgcgtgaacggctctgaaggc
atcacggccagccgcgacaagttgcacgcgcaccaggtcctcgcccggcaccggatcggc
atgccaaccaccgcctttgccgcgtcgccgaaggacaccaataacctgatcggcctcgtc
ggcaccgcgcccctgatcgtgaagctgctcgaatccacgcagggcaaaggcgtcgtgatg
gccgagacgaagaaggcggcggaatccgtcatcgacgccttccggggtttgcgcgccaac
ttcctcgtccagcaattcgtcaaggaagccgccggggaggacatccgttgcttcgtgatc
gccggcaaggtcgtcgcctcgatgcggcgcaaggcggcgggtgacgatttccggtcgaac
ctccaccggggcgggaccgctgaatccgtgcggatcaccaaggaagagcgcaccgccgct
gttcgcgccgcgcgcgccttcggactaaacctcgccggggttgacctgctccgctccaac
gacgggccgaagatcctcgaggtgaactcctcccccggtctcgaggggatcgagggcgcg
tcgaagaagaacctcgcggggatgctctacgaccagatcgagcagcaggtccggcccacg
ccactgaagcaaagccgcgtatcgggggcgaagggctga
DBGET
integrated database retrieval system
