Pelagovum pacificum: I8N54_10945
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Entry
I8N54_10945 CDS
T06971
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppaf
Pelagovum pacificum
Pathway
ppaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8N54_10945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppaf03019
]
I8N54_10945
03009 Ribosome biogenesis [BR:
ppaf03009
]
I8N54_10945
Enzymes [BR:
ppaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I8N54_10945
Messenger RNA biogenesis [BR:
ppaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I8N54_10945
Ribosome biogenesis [BR:
ppaf03009
]
Prokaryotic type
rRNA processing factors
I8N54_10945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Collagen
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QQA41347
LinkDB
All DBs
Position
complement(2219654..2222323)
Genome browser
AA seq
889 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFEAQAKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPIADREALLAEEKAFAESQRAEDEGDEKPAPKKRSRSRS
RSRSKAASTDSSDAVATEEVKDTGAETSGPEIAGMETIDLDDGDNADDEGLSPMETVAET
PVDTPSSDDEGAESDDATSDDNGASDIESVADEDDQEDVRPARKPRPRKYKIQEVVKVRQ
VMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIASA
MDVPEGAGLIIRTAGSQRTKTEIKRDYEYLQRLWEQIRELTLKSIAPAPIYEEGNLIKRS
IRDLYSKEIDEVIVEGEAGYRVAKDFMKMIMPSHAKNVKNYIDPMPLYARHQVESYLNSM
FNPTVQLPSGGYIVIGVTEALVAIDVNSGRATKEGSIEQTAVKTNLEAADEVARQLRLRD
LAGLIVIDFIDMDERKNNAAVEKRLKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMLE
ATTQPCSHCHGTGLLRSDDNVALSILRQIEEEGVRGRSREVLVKAPVGIANFLINQKREH
VAGIEARYGLSVRIEGDPTLISPDFALEKFKTATRNVPEVEAPVISSDMVSVEEVEEEEV
VAEVVEEPTPEPEEKPKKRRRRRRRRKGSGSNGENGENGENGDNGHSGESGSDSTDAQSA
PAEAAETPAEAPAEVPAEAAEAAPDEAEKPKKRTRSRRKTAAQKAAEAEAAAAAEAEAQP
EAPAPEAPVVAEAPVADTPAPEAEAPAPADTAAEAPSAEPVAEAPAEEAPAEEPAPEAPA
EEPVAQQPAPEPAPEPAPEPQAEEREPVAANGDTEEKPKRRGWWSIGRG
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgatgccacccacgcggaggaaacccgcgtcgtggtggtc
gacggaaacaaggtcgaggagttcgacttcgaagcgcaggcaaagcgtcagctagccggc
aacatctacctggcgaaagtgacgagggtcgaaccctcgctgcaggccgccttcgtggac
tacggcgggaaccgccacggcttcctcgccttctcggaaatccaccccgactattaccag
atcccgatcgccgaccgcgaagcgctgctggccgaggaaaaggcctttgccgaaagccag
cgggccgaggacgagggtgacgagaagcccgcgccgaagaagcgctcgcgctcgcgcagc
cggtcccgctccaaggcggcctccaccgacagcagcgatgcggtcgcgacggaagaggtc
aaggataccggtgccgagacctccggccccgagatcgcgggcatggagacgatcgacctc
gacgatggcgacaacgccgacgacgaggggctgagcccgatggaaacggtcgccgagacg
ccggtcgacacgccgtcctcggacgacgagggcgcggaatccgacgatgcgacgtccgac
gacaacggcgcgtccgatatcgagtcggtcgccgacgaggacgatcaggaagacgtgcgc
ccggcccgcaagccgcgcccgcgcaagtacaagatccaggaagtcgtgaaggtgcgccag
gtcatgctggtgcaggtcgtcaaggaagagcgtggcaacaagggcgcggccctgaccacc
tacctcagcctcgccggccgctattgcgtgctgatgcccaacaccgcccgtggcggcggc
atctcccgcaagatcaccaatgcagccgaccgcaaaaagctcaaggaaatcgcctcggcg
atggacgtccccgagggggccggcctcatcatccgcactgccggcagccagcgcaccaag
accgagatcaagcgcgactacgagtacctgcagcgcctgtgggagcagatccgcgagctg
acgctcaagtcgatcgcgcccgcgccgatctacgaggaaggcaacctcatcaagcggtcg
atccgtgatctctactccaaggagatcgacgaggtgatcgtcgaaggcgaggccggctac
cgggtggccaaggacttcatgaagatgatcatgccgtcccacgccaagaacgtgaagaac
tacatcgacccgatgccgctctacgcgcgccaccaggtcgagagctacctcaactcgatg
ttcaacccgaccgtgcagctgccgtcggggggctatatcgtgatcggcgtgaccgaggcg
ctggtcgccatcgacgtcaactccggccgggccaccaaggaaggctcgatcgagcagacc
gccgtcaagaccaacctcgaggccgctgacgaggtggcccgccagctgcgtctgcgcgac
ctcgccggcctgatcgtcatcgacttcatcgacatggacgagcgcaagaacaacgccgcc
gtcgagaagcgcctgaaggacaagctgaagaccgaccgcgcccgcatccaggtggggcgc
atctccggcttcggcctgctcgagatgtcccgccagcgcctgcgcccggggatgctcgag
gcgacgacccagccttgttcgcactgccacggcacgggcctgttgcgctccgacgacaac
gtcgcgctgtcgatcctccgccagatcgaggaagaaggcgtgcgcggccgctcccgcgag
gtgctcgtcaaggcgcccgtcgggatcgcgaacttcctcatcaaccagaagcgcgagcac
gtcgccggaatcgaggcgcgctacggcctgtccgtgcgcatcgagggtgatcccacgctg
atctcaccggacttcgcgctcgagaagttcaagaccgcgacgcgcaacgtgcccgaggtc
gaagcgccggtgatctcctccgacatggtctccgtcgaggaggtcgaagaggaagaggtg
gtcgccgaagtcgtcgaagagccgactccggagccggaagagaagccgaagaagcgccgt
cggcgtcgtcgccgccggaagggctccggctctaacggtgaaaacggcgagaacggcgag
aacggggataacggacacagcggcgagtcgggcagcgacagcaccgacgcgcaatccgcg
cccgccgaggcggcggagacacccgccgaagctccggcggaggttcctgccgaggcggcc
gaggccgcgccggacgaggccgagaagccgaagaagcggacccgctcgcgtcgcaagacc
gccgcgcagaaggctgcggaggctgaagccgccgctgccgccgaggcggaggcccagccc
gaggcgcccgcaccggaagctcccgtcgtggccgaagcccctgttgcggacacccctgcg
cccgaggccgaagcgcctgcgcccgcggataccgctgcagaggcaccctccgctgaaccg
gttgccgaagcgccagccgaggaagcaccggcagaagaacctgcgcccgaagcaccggcc
gaagagccggtcgcgcaacagcccgcaccggaaccggcccccgagcccgcaccggaaccg
caggcggaagagcgcgagccggtcgccgccaacggcgacaccgaagaaaagccgaaacgg
cgcggatggtggtccatcggccgcggctga
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