Pelagovum pacificum: I8N54_14160
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Entry
I8N54_14160 CDS
T06971
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppaf
Pelagovum pacificum
Pathway
ppaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I8N54_14160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppaf03019
]
I8N54_14160
Enzymes [BR:
ppaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I8N54_14160
Messenger RNA biogenesis [BR:
ppaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I8N54_14160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
DUF4443
Motif
Other DBs
NCBI-ProteinID:
QQA41933
LinkDB
All DBs
Position
complement(2895728..2897020)
Genome browser
AA seq
430 aa
AA seq
DB search
MFDFDMLGLQPALNDALKRTGFSEPTPIQNQAIPLALEGHDILGLAQTGTGKTLAFGLPL
IDHLLAARGKPEPKTAKALILAPTRELVNQIADSLRTLTDGTPIRVVTVVGGQSIGRQIN
MLSRGTDILVATPGRLIDLMDRGSVDLRTVKHLVLDEADQMLDLGFIHALRRIAPKLGTP
RQTMLFSATMPKQMEELSSAYLTNPRKVQVSPPGKAADKITQSVHFVEKPAKPSKLREVL
SRDPDALTLVFARTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGTITTLV
ATDVAARGIDIPGVSYVVNYDLPEVADNYVHRIGRTARAGREGEAIAFCASDEGDLLYQI
EKLMKIEIPVASGSRPERGAGERSNRRGPSGGQRRRGGSGGGGKKPAAAAKPASKPASAK
RRRPRRGRAA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgatttcgatatgctcggcctccagccggcactcaacgacgcgctcaagcgcacc
ggcttctccgagccgaccccgatccagaaccaggccattccgctggcgctcgaaggtcac
gacatcctcggcctcgcccagaccggcaccggcaagacgctcgcgttcgggctgccgctg
atcgaccacctgctcgccgcgcgcggcaagccggagccgaagaccgccaaggcgctgatc
ctcgcacccacccgggaactggtgaaccagatcgccgacagcctgcgcaccctcacggac
ggcacgccgatccgtgtcgtcactgtcgtcggcggccagtccatcggccgtcagatcaac
atgctgtcgcgcggtaccgacatcctcgtcgccaccccgggccggctgatcgacctgatg
gatcgcggctccgtcgacctgcgcacggtgaagcacctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccacgcgctgcgccgcatcgcgccgaagctcggcacgccg
cgccagacgatgctcttctccgccaccatgcccaagcagatggaagagctgagcagcgcc
tacctcaccaacccgcgcaaggtgcaggtctcgccccccggcaaggccgccgacaagatc
acccagtcggtgcacttcgtcgagaaacccgccaagccgagcaagctgcgcgaagttctg
tcccgcgaccccgacgccctgaccctcgtcttcgcccgcaccaagcacggtgcagagaag
ctgatgaagggcctcgtggcggacggctacaacgccgcctcgatccacggcaacaagagc
cagggccagcgtgaccgcgccatcaaggcgttccgcgatggcacgatcaccacgctcgtc
gccaccgatgtcgccgcgcgcggcatcgacattcccggcgtttcctacgtggtgaactac
gacctgcccgaggttgccgacaactacgtccaccgcatcggccgcaccgcccgtgccggc
cgcgagggcgaggcaattgccttctgcgcctcggacgagggagatctgctctaccagatc
gagaagctgatgaagatcgagatcccggtcgccagcggctcccgccccgagcgtggcgcg
ggcgagcgcagcaatcgtcgcgggccgagcggcggtcagcgtcgtcggggtggtagtggc
ggtggcggcaagaagcccgccgcggctgcgaaaccggcctccaaaccggccagcgccaag
cgccgccggccgcgtcgcggccgcgccgcctga
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