Pelagovum pacificum: I8N54_18630
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Entry
I8N54_18630 CDS
T06971
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
ppaf
Pelagovum pacificum
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppaf03400
]
I8N54_18630
Enzymes [BR:
ppaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I8N54_18630
DNA repair and recombination proteins [BR:
ppaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
I8N54_18630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
IL23
FAD_binding_4
Motif
Other DBs
NCBI-ProteinID:
QQA42760
LinkDB
All DBs
Position
3780179..3783100
Genome browser
AA seq
973 aa
AA seq
DB search
MIFPESTGPRVFALPPGVDFGTELVRGLRERSSHLPPEHVARIELYLNTRRMQRRIRDVY
DAGPPMLLPRLRLVTDLALAPVPGLTPPVGKMQRRLEIVRLVAALLDADPTLAPRSALFD
LADSLSGLLDEMQGEGVDPDTLRQLDVSDQSEHWQRTLTFLNIVEPYFAGAVGAEARQRA
AVERLSAQWTEAPPGQPMLIAGSTGSRGATAMFMEAVARLPQGAIVLPGFDFDLPRSVWE
SMTDGMSAEDHPQYRFRALFDRLGLSRRDVEPWTDAEPASASRNRLISLSLRPAPVTDAW
QIEGPELRDIEGATSRVTLIEAPSPRSEAETIALVMRDAVEQGRSVSLISPDRMLTRQVE
AALDRWLIVPDDSAGQPLSQTPTGRFLRHVGGLLTHRLTSEALLTLLKHPLCHGGSERGP
HLLHTRELELHLRRHGPPFPNGDTLRAWAEKKPGREGWAAWLAARLDTIPAQDERDAPDH
LALHLALAEAFAAGHGDGASQLWQRDAGRKAQEVLTEFGAHAAAAGTLSPLDYLSLFEGI
IGGAEVRNPVTGHPLVRFWGTLESRVQGAEVVILGGLNEGSWPEVPSPDPWMNRSMRHKA
GLLLPERRIGLSAHDYQQAVAGAEVVLSRASRSEDAATVPSRWINRLTNLMNGLPSNGGP
EALAAMRARGALWVAKAARLSAPDRAVPPAPRPSPRPPVEARPKRLSVTQIQTLIRDPYA
IYARNVLRLSALDPLVPEPDAPLRGIIIHSALERFIKAGHDPADPATRDQLVATARDALT
DSCPWPAQRQLWLAGFERVADWFLETEVARRAVGTPSHFELRGKVHLGDPDFTLSCLADR
LDLTEGGELILYDYKTGKPPTEKQQISFDRQLLLEAAMAARGAFAEVGPRRTVIAEFIGL
GSSPAIVPAPMDEAPPDQVWEEFRALIRAWADPNRGYSARARAFTEESVGDYDHLARRGE
WDGATDFTPEDIQ
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcccagagtcgaccggcccgcgtgtcttcgcgctgccgcccggtgtcgatttc
ggaaccgagctggtgcgcgggctgagggaacggtcgtcgcacctcccgcccgagcatgtc
gcccggatcgagctctatctcaacacgcggcggatgcagcgccggatccgcgatgtctac
gatgccgggccgccgatgctgctgccccggttgcggctggtcaccgacctcgcgcttgcg
cccgttccgggcctcacaccgcccgtcggcaagatgcagagacggcttgagatcgtgcgc
ctcgtcgctgccctgcttgacgcggatccgacgcttgcaccgcgctcggccctgttcgac
ctcgccgacagcctgtccggcctgctggacgagatgcagggcgaaggcgtcgaccccgat
acgctccgccagctcgacgtgtccgaccagtcggaacactggcagcggaccctgaccttc
ctgaacatcgtcgaaccctacttcgccggcgctgttggtgcggaggcgcggcagcgtgcc
gccgtcgaacgcctgtccgcgcaatggaccgaggcaccgcccggccagccgatgctgatc
gcggggtcgaccgggtcgcgcggggccaccgcgatgttcatggaagccgtcgccagactg
ccgcagggggccatcgtgctgcccggcttcgatttcgatctgccccggtccgtctgggag
tcgatgaccgacggcatgagcgcggaggaccatccgcaataccgcttccgcgcgctgttc
gaccggcttggcctatcgcggcgcgatgtagagccttggacggatgccgagccggcgagc
gcctcgcgcaatcggctgatctcgctcagcctgcggcccgcccccgtgaccgatgcgtgg
caaatcgaaggtccggagcttcgggacatcgaaggcgctacctcgcgcgtgacgctgatc
gaggcgccgagcccccggtcggaggccgagacgatcgccctcgtcatgcgagatgcggtt
gaacagggccggtccgtctcgctgatctcgcccgaccggatgctgacgcggcaggtcgaa
gcggcgctcgatcgctggctgatcgtacccgacgacagcgcgggccagcccttgtcgcaa
acgccgaccggtcgcttcctgcggcatgtcggcggattgctgacacaccggttgacgtcc
gaggcgctgctgacgctgctgaagcatccgctctgccacgggggcagcgaacgcgggccg
cacctcctccacacccgtgagctggagcttcacctccgccgccacgggccgcccttcccg
aacggcgacaccctgcgcgcctgggccgagaaaaagccgggccgcgagggttgggccgcg
tggctggcggcgagactagacacgattcctgcgcaggacgagcgtgacgcgcccgatcac
ctcgcccttcaccttgcgctcgccgaagcgtttgccgccggtcatggcgacggcgcgagc
cagctctggcagcgggacgccggccgcaaggcgcaggaggtgctgaccgaattcggcgcc
cacgcggcagccgccggcacgctgtcgccgctcgactacctgtcgctgttcgaaggcatc
atcggcggtgccgaagtccgcaacccggtgaccgggcatccgctcgtccgcttctggggc
acgctcgagtcccgcgtgcagggggcggaggtcgtgatcctcggcggcctcaacgaggga
agctggccggaagtgccgagcccggatccgtggatgaaccggtcgatgcggcacaaagcg
ggtctgttgctgcccgaacgtcgcattggcctttctgcgcatgactaccagcaggcggtc
gcgggggcggaagtcgtcctcagccgcgcgtcccggtcggaggatgcggcgaccgtgccg
tcgcgctggatcaaccggcttacgaacctgatgaacggcctgccgtcgaacggcgggcca
gaggcattggcggcgatgcgggcgcgcggcgcgctttgggtcgcgaaggcggcacgcctg
tcggcccccgaccgcgcggtcccgcctgcgccgcgtccttcgcctcgtccgccggtggag
gcgagaccgaaacgcctgtcggtgacccagatccagacactgatccgggacccttacgcg
atctacgcccgcaacgtactgcgcctctccgcgctcgatcctctcgtgccggagccggat
gcgcccctgcgcgggatcatcatccacagcgcgctcgagcgtttcatcaaggcggggcac
gacccggcggatccggcgacgcgtgatcagcttgtcgcgaccgcgcgggacgcattgacc
gactcctgcccgtggccggcgcagcggcagctttggcttgccgggttcgagagggtcgcg
gactggttcctcgagacagaggtcgcacggcgcgccgtcgggacaccgtcgcatttcgag
cttcgcggcaaggttcacctcggggacccggacttcacgctgtcctgcctcgccgatcgg
ctcgacctgaccgaggggggcgagctgatcctctacgattacaagacgggcaagccgccg
accgagaagcagcaaatcagcttcgaccggcagcttctgctggaggcggcgatggccgcg
cgcggcgcattcgccgaggtcggaccccgccgcactgtgatcgcggagttcatcgggctt
ggcagttctcccgcgatcgtgcccgcgccgatggacgaggccccgccggaccaggtgtgg
gaagagttccgcgccctgatccgggcctgggcagacccgaacagggggtattccgcccgc
gcacgggccttcacggaagagtcggtcggcgactacgaccacctcgcccggcgcggcgaa
tgggacggcgcgacggacttcacgccggaggacattcaatga
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