Pelagovum pacificum: I8N54_19875
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Entry
I8N54_19875 CDS
T06971
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppaf
Pelagovum pacificum
Pathway
ppaf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
I8N54_19875 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppaf03400
]
I8N54_19875 (mutM)
Enzymes [BR:
ppaf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
I8N54_19875 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
I8N54_19875 (mutM)
DNA repair and recombination proteins [BR:
ppaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
I8N54_19875 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
QQA42996
LinkDB
All DBs
Position
4038103..4038954
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AA seq
283 aa
AA seq
DB search
MPELPEVETVRRGLAPAMEGAVIDLAQVNRPDLRWPFPEQFADRLTGRRVLRLGRRSKYL
LAELDGDETLIVHLGMSGRMTVSGDPLGQFHHDHPMPEKHDHVVLNMGNGARITFNDPRR
FGAMDLWPSAEVERHWLIRNLGPEPLGNAFSEGYFVERLKTRNTPMKAALLDQRVVAGLG
NIYVCEVLHRAGIDPRRTARRVSDRRLAATVPIVRDVLSEAIEAGGSSLRDYRRADGELG
YFQHVFRVYDREGHPCPREGCGGTVTRIVQSGRSTFWCPACQR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgccagaggtcgagacagtccgtcgcgggctggccccggctatggagggg
gcggtgatcgacctcgcgcaggtcaaccgcccggacctgcgctggccgtttccggagcaa
ttcgcggaccgcctgaccgggcgccgggtgctgcggctcggccgacgatcgaaatacctg
ctggcggaactggacggagacgaaaccctgatcgtgcatctcggcatgtcggggcggatg
accgtcagtggcgacccgcttggtcagtttcaccacgaccacccgatgccggagaagcac
gaccatgtcgttctgaacatgggaaacggggcgcggatcacattcaacgacccgcgtcgg
ttcggggcgatggatctctggcccagtgcggaagtcgaacggcactggctgatccggaac
ctcggtccggaaccgctcggtaatgcgttcagcgagggatacttcgtcgagcggttgaag
acgcgcaatacgccgatgaaggcggccctgctggatcagcgcgtcgtcgcgggactcggc
aatatctacgtgtgcgaagtcctccaccgggccggaatcgacccgcgtcgcacggcgcgg
cgggtgtccgaccgtcgccttgcggcaacggttccgatcgtgcgcgacgtgctgtcggag
gcgatcgaggcgggcggttcttccctgcgcgactatcgccgggctgatggcgaactgggc
tatttccagcatgttttcagggtctacgaccgggaaggtcacccctgcccaagggaaggc
tgcgggggtacggtgacacgcatcgtacaatcggggcgttccacattctggtgtcccgcc
tgccaaagatga
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