Parvimonas parva: GAI15033_00050
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Entry
GAI15033_00050 CDS
T10920
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ppag Parvimonas parva
Brite
KEGG Orthology (KO) [BR:
ppag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppag03032
]
GAI15033_00050 (gyrB)
03400 DNA repair and recombination proteins [BR:
ppag03400
]
GAI15033_00050 (gyrB)
Enzymes [BR:
ppag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
GAI15033_00050 (gyrB)
DNA replication proteins [BR:
ppag03032
]
Prokaryotic type
DNA Topoisomerases
GAI15033_00050 (gyrB)
DNA repair and recombination proteins [BR:
ppag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GAI15033_00050 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
BFT65429
LinkDB
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Position
4325..6241
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AA seq
638 aa
AA seq
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MSKEKIRDYGAKNIKVLTGLEPVRLRPGMYIGSTGAKGLHHLVYEVVDNSIDEALAGVCD
TITVKIYKDNSVSVEDNGSGIPVEVHPQTGKSTLETVLTILHAGGKFNNDAYQVSGGLHG
VGVSVVNALSEWLVANVKRDGKLYEQKFSRGDATSKLEVVGTSKENGTIITFKPDSEIFD
TTIFEKEILRNRFREMAFLNKGVKIVFTDEREDFNETFHYEGGIKSFVEYMNRNKNALHS
DVIYFQGEKNNSQVEISMQYTDGYSENILTFANNIHTPEGGTHLVGFKTALTRAINDYGR
KYNLIKDKDSNLQGDDTREGLTGIVSIKLPNPQFEGQTKAKLGNSESRGIVETFLYDNLM
TFLEENPKVGKIIIEKAQNSARAREAARKARDLTRKKSILDNTTLPGKLSDCQESDISVN
EIYLVEGDSAGGSAKQGRDSKFQAVLPLKGKIMNVEKARIDKILGYEEIKSMITAFGTGI
GKDFNLDNLRYGKIVIMTDADVDGAHIRTLILTFFYRYMKELIEQGHVYIAQPPLYGIIK
GVKVVKYCWTDEELQTSLDELGRDAHRIQRYKGLGEMNPAQLWETTMNPENRLFLQVKID
DEELVSIDETFSTLMGDKVEPRREFIEQNAKYVKNLDA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagaaaaaattagagattatggtgcgaaaaatattaaggttttaaccggactt
gagcctgttagacttagacctggtatgtatatcggttcaacaggtgcaaagggacttcat
cacttggtttacgaagttgttgacaacagtattgatgaggctttggctggtgtttgtgat
acgataactgttaagatttataaagacaattctgttagcgttgaggataatggtagtggt
attccggttgaagtacatccacaaactggaaaatcaactcttgaaacagttttgactatt
cttcatgcaggtggtaagtttaataatgacgcttatcaagtttcaggtggacttcatggc
gttggtgtttctgttgtaaacgcactttcagaatggcttgttgccaatgttaagagagat
ggaaaactttatgagcaaaaattttcaagaggggatgcgacttcaaaattagaagttgtt
ggaacttcaaaagaaaatggtacaattataacttttaaaccggatagcgaaatttttgat
acaactatttttgaaaaagaaattttaagaaatagatttagagaaatggcatttttaaat
aagggtgttaagattgtttttacagatgaaagagaagattttaatgaaactttccattat
gaaggtggaattaagtcatttgttgagtatatgaatagaaataaaaatgcacttcacagt
gatgttatttacttccaaggcgaaaaaaataattcacaagttgaaatttcaatgcaatat
acagacggatattctgaaaatattttaacatttgctaacaatattcacactccagagggt
ggaactcacttagttggttttaaaactgccctaactcgtgcgataaatgactatggaaga
aaatataatctaataaaagataaggactcaaaccttcaaggtgatgatacgagagaaggt
cttacaggtattgtttcaataaagctaccaaatccacaatttgaaggacaaactaaggct
aagcttggaaatagtgagagtcgtgggattgttgaaactttcctttatgataacctaatg
actttcttggaagaaaatccaaaggttggtaaaatcattatagaaaaggcgcaaaacagt
gcaagggctagagaggctgcaagaaaggcaagagatttaactcgtaaaaaatctatcctt
gacaatacaactctacccggaaagttatccgactgtcaagagagcgacatttctgtaaat
gaaatttatcttgtcgaaggggattctgccggtggttctgcaaaacaaggtagagatagt
aaattccaagccgttttaccacttaaaggtaagattatgaatgttgaaaaggcaagaatt
gataagattttaggttatgaagaaatcaaatcaatgattactgcttttggtacaggaatc
ggaaaagattttaatttagataatttaagatatggaaaaatagttattatgaccgatgcc
gacgttgacggtgcgcatattagaacgcttattttaactttcttctatcgttatatgaaa
gaattaatcgaacaaggtcatgtttatatcgctcaaccaccactttacggaataatcaaa
ggggttaaggttgtaaaatattgttggactgatgaagaattacaaacaagtttagatgaa
cttggtcgtgatgctcatagaattcaaagatataaaggtcttggggaaatgaaccctgca
caactttgggaaactacaatgaatcctgaaaacagacttttcctacaagttaaaatcgat
gatgaagagcttgtttcaatagacgaaactttctcaactcttatgggagataaggttgag
ccaagacgtgagtttatcgaacaaaatgctaaatatgttaagaatcttgacgcatag
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