Paraburkholderia pallida: E1956_02735
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Entry
E1956_02735 CDS
T09864
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ppai
Paraburkholderia pallida
Brite
KEGG Orthology (KO) [BR:
ppai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppai03032
]
E1956_02735 (gyrB)
03400 DNA repair and recombination proteins [BR:
ppai03400
]
E1956_02735 (gyrB)
Enzymes [BR:
ppai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
E1956_02735 (gyrB)
DNA replication proteins [BR:
ppai03032
]
Prokaryotic type
DNA Topoisomerases
E1956_02735 (gyrB)
DNA repair and recombination proteins [BR:
ppai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E1956_02735 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QBQ96195
UniProt:
A0A4P7CKB7
LinkDB
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Position
1:complement(619425..621896)
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AA seq
823 aa
AA seq
DB search
MTDTNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL
AGYCNDIHVVIHADNSISITDNGRGIPTGVKMDDKHDPKRSAAEIVMTELHAGGKFDQNS
YKVSGGLHGVGVSCVNALSSFLRLTVRRDGKKHFMEFHRGVPQNRILEERDGHMVSPMQL
LGDTENRGTEVHFMADETIFGSVEYHYDILAKRIRELSFLNNGVRIRLTDQRTGKEDDFA
FAGGVKGFVEYINKAKQVLHPNIFYVSSEKDGVGVEVAMQWNDSYNESVLCFTNNIPQRD
GGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQTK
DKLVSSEVRAPVEEVVAKALEEFLLETPNDAKTICGKIVDAARARDAARKAREMTRRKGV
LDGVGLPGKLADCQEKDPAKSEVYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKAR
YDKLLSSEQIVTLITALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQ
MPDMIERGYVYIAQPPLYKLKAGKDERYLKDETELNAHMLRLALQGSELVPNEGATPISG
DALGELARSYQLARGVVDRLSRLYDERALEAIMDGVSIDLSSEASTETSARALEAQLRDD
PLKPEVTVVPMYDAVREQRSLRVERRHHGNVKVSVIDEEFQLTADYQQLVNTANTFKGLI
GKNALIKRGERSMAVTNFKSAMKWLIADAERNVSKQRYKGLGEMNPGQLWETTMDPTVRR
LLRVQIEDAIAADGIFTTLMGDDVEPRRAFIENNALRAGNIDV
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgactgatacgaacaactcgcaacccgacaacagctacggcgcctcgtcgatccagatc
ctcgaaggactggaggcggtgcgcaagcggcccgggatgtacatcggcgacacgtcggac
ggcaccggtctgcaccatctcgtcttcgaagtgctcgacaactcgatcgacgaagccctc
gccggctactgcaacgacatccacgtggtgatccacgcggacaactcgatctcgatcacc
gacaacggccgcggcattcccacgggcgtgaagatggacgacaagcacgatccgaagcgc
agcgccgccgaaatcgtgatgaccgagctgcacgcgggcggcaagttcgaccagaacagc
tacaaggtctcgggcggcctgcacggcgtgggcgtctcgtgcgtgaacgcgctctcgagc
tttctgcgcctcaccgtgcgccgcgacggcaagaagcacttcatggaattccaccgtggc
gtgccgcagaaccgcatcctcgaagagcgcgacggccacatggtctcgccgatgcaactg
ctcggcgacacggaaaaccgcggcaccgaagtgcacttcatggccgacgaaaccatcttc
ggcagcgtcgagtaccactacgacattctcgccaagcgcattcgcgaactctcgttcctg
aacaacggcgtgcgcatccgcctgaccgaccagcgcaccggcaaggaagacgatttcgcc
ttcgcgggcggcgtgaagggctttgtcgagtacatcaacaaggcgaagcaggtcctgcac
ccgaacatcttctacgtgtcgagcgagaaggacggcgtgggcgtcgaagtggcgatgcag
tggaacgacagctacaacgaaagcgtgctgtgcttcacgaacaacatcccgcagcgcgac
ggcggcacgcacttgaccggcctgcgcgcggcgatgacgcgtgtgatcaacaagtacatc
gccgataacgaaatcgcgaagaaggccaaggtcgagacctcgggcgacgacatgcgcgaa
ggcctgtcgtgcgtgctctccgtgaaggtgccggagccgaagttcagctcgcagaccaag
gacaagctggtttcttcggaggtgcgtgcgccggtcgaggaagtcgtggcgaaggcgctg
gaagagttcctgctggaaacgccgaacgacgccaagaccatttgcggcaagatcgtcgat
gccgcgcgtgcgcgcgacgccgcgcgcaaggcgcgcgagatgacgcgccgcaagggcgtg
ctcgacggcgtgggcctgccgggcaagctcgcggactgccaggaaaaggacccggccaag
tccgaggtgtacatcgtcgagggcgactcggcaggcggctcggccaagcagggccgcgac
cgcaagttccaggcaatcctgccgctgcgcggcaaggtgctgaacgtcgagaaagcgcgc
tacgacaagctgctttcgagcgagcagatcgtcacgctgatcacggcgcttggctgcggc
atcggcaaggacgactacaacctcgagaagctgcgctaccaccgcatcatcatcatgacc
gacgcggacgtggacggcgcgcacatccgcacgctgctgctcacgttcttctatcggcag
atgccggacatgatcgaacgcggctatgtgtatatcgcgcagccgccgctgtacaagctc
aaggcgggcaaggacgagcgctatctgaaggacgagacggagctgaacgcgcatatgctg
cgcctcgcgctgcagggctcggagctcgtgccgaacgaaggcgcgacgccgatttccggc
gacgcgctgggcgagctcgcgcgttcgtaccagctcgcgcgcggcgtggtggatcgtctt
tcgcgtttgtatgacgagcgtgcgctcgaagcgatcatggacggcgtgtcgatcgacctg
tcgagcgaagcttccacggagacttcggcacgtgcgctcgaagcgcagttgcgcgacgat
ccgctgaagcccgaagtgacggtcgtgccgatgtacgacgcagtgcgcgagcagcgctcg
ctgcgcgtggagcgccgtcatcacggcaacgtgaaggtctcggtgatcgacgaggagttc
cagctcaccgccgactatcagcagctcgtgaatacggccaatacgttcaagggcttgatc
ggcaagaacgccctcatcaagcgcggcgagcgcagcatggcggtgaccaacttcaagagc
gcgatgaagtggctgatcgcggatgccgagcgcaatgtctcgaagcagcgttacaagggg
ctcggtgagatgaaccccgggcagctctgggaaacgacgatggatccgaccgtgcggcgt
ttgctgcgcgtgcagatcgaggacgcgattgccgccgatggcatcttcacgacgctcatg
ggcgacgatgtggagccgcgtcgcgcgtttatcgagaacaatgcgctgcgggcggggaat
attgacgtttga
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