Paraburkholderia pallida: E1956_04185
Help
Entry
E1956_04185 CDS
T09864
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppai
Paraburkholderia pallida
Pathway
ppai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E1956_04185 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppai03021
]
E1956_04185 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppai03400
]
E1956_04185 (rpoC)
Enzymes [BR:
ppai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E1956_04185 (rpoC)
Transcription machinery [BR:
ppai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E1956_04185 (rpoC)
DNA repair and recombination proteins [BR:
ppai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E1956_04185 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
PYNP_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
QBQ96443
UniProt:
A0A4P7CRQ7
LinkDB
All DBs
Position
1:935632..939885
Genome browser
AA seq
1417 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVETLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLETMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINAKGEGMTFTGVSEVLRAYENK
EVELASRVNVRITEMVHNEDKSEGAPAFVPKISLYATTVGRSILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
EAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSNTSEAVGKAMMEQLATEPVIDRDGKETR
QESFNSIYMMADSGARGSATQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETIYASGDLLDEDAVETIESLGIDEVRVRTPLTCETRYGLC
ASCYGRDLGRGSRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTATMRYVTSAKGEQIVISRSGEAIIADDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGEEVKIPGTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQNEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDKMIAEDKRPATYENVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKES
SDRERFDQIAAEEAFEFGTPETPAAEPQPQQPHTTDE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaagaagaagtttttgacgcgatc
aagatcggtctggcctcgccggacaagatccgctcgtggtcgttcggtgaagtgaagaag
ccggagaccatcaactaccgtaccttcaagccggaacgggatggcctgttctgcgcgaag
atcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtcacgctggcgaaggtgcgccgtgag
cgcatgggccacatcgagctggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcatatgtggtgatcgaaccgggcatgacgccgctgaaggcgcggcagatcatg
accgaagaggattactacaacaaggtcgaagagtacggtgacgaattccgcgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgtgcgatcaacatcgacgaacaggtcgaaacg
ctgcgcaccgagctgaagaacaccggctcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtgctcgaggccttccagcgttcgggcatcaagcccgaatggatggtgctcgaa
gtgctgccggtgctgccgcccgaactgcgtccgctggtgccgctggacggtggccgcttc
gcgacctcggacctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgtctgaag
cgtctgctcgagctgaaggcgccggagatcatcgtccgcaacgaaaagcggatgctccag
gaagcggttgactcgctgctcgacaacggccgtcgcggcaaggcgatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggtaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggtccaacg
ctgaagctgcaccagtgcggtctgccgaagctgatggcgctcgagctgttcaagccgttc
atcttcaacaagctggaaacgatgggcgttgccacgaccatcaaggctgcgaagaaggaa
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtcatgctcaaccgtgcgcctacgctgcaccgtcttggcattcaggctttcgagccagtg
ctgatcgaaggtaaggcaatccagctgcacccgctcgtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgttcacgttccgctgtcgctcgaagcgcagatggaagcg
cgcacgctcatgctcgcctcgaacaacgtcctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggcctgtactacgccacgcgcgaagcgatcaacgcg
aagggcgagggcatgacgttcacgggcgtgtcggaagtcctgcgcgcctacgagaacaag
gaagtcgagctggcctcgcgcgtcaacgtgcgtattaccgaaatggtccacaacgaggac
aagtcggaaggcgcaccggcattcgtgccgaagatctcgctgtacgcgacgaccgttggc
cgctcgatcctgtcggaaatcctgccgccgggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgtctgatcaacaccgcgttccgcaagtgcggtctgcgc
gaaacggtgatcttcgcggaccagctgatgcagtcgggtttccgtctggcaacgcgcgcc
ggtatttcgatctgcgtggacgacatgctcgtgccgccgcagaaggaaaccatcgttggc
gaagccgcgaagaaggtgaaggaatacgaccgccagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcgaacacgtcggaagcggtcggcaag
gcgatgatggagcagctcgcgacggaaccggtcatcgaccgcgacggcaaggaaacgcgt
caggaatcgttcaactcgatctacatgatggccgactcgggcgcgcggggttccgcaacc
cagattcgccagctggcgggtatgcgcggcctgatggcgaagccggacggctcgattatc
gaaacgccgattaccgcgaacttccgcgaaggtctgaacgtgctgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggttac
ctgacgcgtcgtctcgtggacgtcacgcaggatctcgtggtcgtcgaggacgattgcggc
acgtcgaacggcgtggcgatgaaggccctcgtggaaggcggtgaagtcgtcgaagcgctg
cgcgaccgtattctcggccgcgttgcggtggcggacgtcgtcaatcctgagacgcaggaa
acgatctacgcctcgggcgacctgctcgacgaagacgcagttgagacgatcgagagcctc
ggcatcgacgaagtgcgcgtgcgcacgccgctcacctgcgaaacgcgctatggcctgtgc
gcctcgtgctatggccgcgacctcggccgtggttcgcgcgtgaacgtcggcgaagccgtc
ggcgtgatcgcggcgcagtcgatcggcgaaccgggcacgcagctcacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcagtcgcttcgtcggtggaagccaagtcgaac
ggtactgtgcgcttcacggcgacgatgcgttacgtcacgagcgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaagccatcatcgccgacgatcacggccgcgagcgcgagcgt
cacaaggtgccgtacggcgcgacgctgctgcagctcgacggtgcgcagatcaaggccggt
acgcagctcgcgacgtgggatccgctcacgcgcccgatcatcaccgagtacggcggtacg
gtgaagttcgagaacgtcgaggaaggcgtgaccgtggccaagcagatcgacgacgtcacg
ggtctgtcgaccctcgtggtgatcgacgtgaagcgccgtggttcgcaggcttcgaagagc
gtgcgtccgcaggtgaagctgctcgacgcgaacggcgaagaagtgaagatcccgggcacg
gagcattcggtgcagatcggcttccaggtcggcgcactgatcaccgtgaaggacggtcag
caggttcaggtaggtgaagtgctcgcacgtatcccgaccgaagcgcagaagacgcgtgac
attaccggtggtctgccgcgtgtggcggaactgttcgaagcacgttcgccgaaggatgca
ggtatcctggcggaagtcacaggtacgacgtcgttcggtaaggacacgaagggcaagcag
cgtctcgttatcacggacctcgagggcaaccagaacgagttcctgatcgcgaaggaaaag
caggtgctggtccacgacggtcaggtcgtcaacaagggcgaaatgatcgtggacggcccg
gccgatccgcacgacatcctgcgtctgcagggtatcgaggcactgtcgcgctacatcgtg
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgatcgtgcgtcagatgctgcgccgtgtgcagatcaccgacaacggcgatacgcgtttc
atccctggcgaacaagtcgagcgttcggacatgctcgacgagaacgacaagatgatcgcg
gaagacaagcgtccggcgacgtacgagaacgtgctgctcggtatcacgaaggcatcgctc
tcgaccgactcgttcatttcggcggcatcgttccaggaaacgacccgcgtgctgaccgaa
gcggcaatcatgggcaagcgcgacgatctgcgtggcctgaaggaaaacgtgatcgtcggc
cgtctgattccggccggtacgggtctcgcgttccacaaggcgcgcaaggcgaaggaatcg
tcggatcgcgagcgtttcgaccagatcgcagcggaagaagcgttcgagttcggcacgccg
gaaaccccggctgcagagccgcagccgcagcagccgcacacgacggacgagtaa
DBGET
integrated database retrieval system
