Paraburkholderia pallida: E1956_05735
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Entry
E1956_05735 CDS
T09864
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppai
Paraburkholderia pallida
Pathway
ppai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E1956_05735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppai03019
]
E1956_05735
Enzymes [BR:
ppai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E1956_05735
Messenger RNA biogenesis [BR:
ppai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E1956_05735
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Sacchrp_dh_NADP
DUF8086
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QBQ96722
UniProt:
A0A4V1AYR8
LinkDB
All DBs
Position
1:complement(1268345..1269976)
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AA seq
543 aa
AA seq
DB search
MSFDSLGLSEPLVRAVNELGYTTPTPIQSQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLTDMPPAATAKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQID
ALKRGVDIVVATPGRLLDHMQQKTIDLSHIEILVLDEADRMLDMGFIHDIKRVLAKLPPK
RQNLLFSATFADEIKALADSLLDSPALIEVARRNTTAETVAQKVYPVDRDRKRELLTHLI
RQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKDGTLQVLV
ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEHQLLKDI
ERLIKRPVPQEVIAGFEPDPNAKPEPILRRGQQQGRGQRQGQGQGRGAAGNGGSAAAAKP
AQARDSRGGNREGGREGNRAQSANGGGNRQNSGGNGVGNNGGQRPAKPAAPNGVRTAKPV
KQQGANHGAQGGRAEHTRRESQRGVSHESALGRPQRKPQSNPGALLGGRPGGSRRDGNGQ
RDR
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattctctcggcttgtccgaaccgctggtccgtgctgtcaacgagcttggc
tacaccactcccacgcccatccagtcgcaagccattcccgccgtgctgaacggcggcgac
ctgctcgccggcgcccagaccggcaccggcaagaccgctggcttcacgctgcccatcctg
cagcgtctgaccgacatgccgccggccgctacggccaaacgcgtcgtgcgcgcgctcatt
ctcacgcccacgcgcgagctggccgcccaggtcgaggaaagcgtgcgtgcctacggcaag
tatctgaagctgaaatcgacggtgatgttcggcggcgtgggcatcaatccgcagatcgac
gccctcaagcgcggcgtggacatcgtggtcgcgacgccgggccgcctgctcgatcacatg
cagcaaaagaccatcgatctctcgcatatcgagatcctcgtgctcgacgaagccgaccgc
atgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccgaag
cgccagaacctgctcttctcggccaccttcgccgacgaaatcaaggcgctcgccgacagc
ctgctcgactcgcccgcgctcatcgaagtcgcgcgacgcaataccacggcggaaacggtc
gcgcagaaggtctaccccgtcgatcgcgaccgcaagcgcgagttgctcacgcatctgatc
cgccagcacaactggttccaggtgctcgtgttcacgcgcaccaagcacggtgcgaaccgt
ctcgccgagcagctcaccaaggacggcatcagcgcgctcgcgatccacggcaacaagagc
cagtcggcccgcacgcgcgccttgagcgaattcaaggacggcacgttgcaggtgctcgtg
gccaccgacatcgcggcgcgcggcatcgacatcgaccagctgccgcacgtggtcaacttc
gacctgccgaacgtgcccgaggactacgtgcaccgcatcggccgcacgggccgcgcgggc
gcgacgggcgaagcggtgtcgctcgtctgcgtggacgagcatcagcttctgaaagacatc
gaaaggctcatcaagcgcccggtgccgcaagaggtcattgcgggcttcgagccggacccg
aacgcgaagcccgagccgatcctgcgccgtggccagcagcaagggcgcgggcagcgtcag
gggcaaggtcagggacgcggcgcggcaggtaatgggggcagtgctgcggcagccaagcct
gcacaggcacgcgactcgcgtggcggcaatcgcgaaggtggccgtgagggcaaccgcgcg
cagtcggccaacgggggtggcaatcgccaaaacagcggcggcaacggcgtcggcaacaac
ggcggccagcgcccggccaagcccgccgcgccgaacggcgtgcgcacggccaagccggtg
aagcagcaaggcgcgaatcacggcgcacagggcggccgcgccgaacacacgcgccgcgaa
agccagcgcggcgtgtcgcacgaaagcgcgctgggccgtccgcagcgcaagccccaatcg
aatccgggcgcactgctcggcggccgtccgggcggctcgcgccgtgacggcaacggccag
cgcgaccgttaa
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