Paraburkholderia pallida: E1956_07820
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Entry
E1956_07820 CDS
T09864
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppai
Paraburkholderia pallida
Pathway
ppai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E1956_07820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppai03019
]
E1956_07820
03009 Ribosome biogenesis [BR:
ppai03009
]
E1956_07820
Enzymes [BR:
ppai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E1956_07820
Messenger RNA biogenesis [BR:
ppai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E1956_07820
Ribosome biogenesis [BR:
ppai03009
]
Prokaryotic type
rRNA processing factors
E1956_07820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QBQ97090
UniProt:
A0A4P7CMR6
LinkDB
All DBs
Position
1:complement(1720753..1724082)
Genome browser
AA seq
1109 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFREGIDMRGARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQAGQSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVNKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALRHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVGVVLIPNKHLET
PHYKLERLRHDDTRLDDPRASWKMAEEAARELESETGYSKRTAEAKPKQEAAVKGITPER
PAPTAQVKPVEATPVGAPVAAAPAGGGGFFAFIKRLFGGAPAAAPAPAPVEQQEKAARPA
REARTERGEKAGAGAGSADRNRNRRSGGRDAAGRGEAAGGTRTGQPSARREEREPREARE
GREGREGRATREPREPREAREARESREPREQRESREARESREPRAEREQRIERVERGQER
SETAEAAPRAERQERGERRERGERAERGERRRQQPAEAAEAQEARLDAASTEADTAEAAQ
AALTDGVTHAGAEDDGATPQGEERRRRRRGRRGGRRERDAEGTQGLEGAADADEGSDEST
DEAAVAAPAGEHAAEHVEAQAEARAPEAVVHASGAEAVVVTTLPVATAAAAEAAQAEQPA
QPAQVIETSSAETSVAVTATPVAPVETQAEAAAEAVAPAVAPVAPVVEPVAAVTPVEAEP
AQPVAAPVAEAATPAAPVVESAAAEALPVREDRVEAPAAPAAEPAVVAQPEPVETRVEAV
VAQAETATVVVETATQRQTQAGAAVTADTLRPMLESAGLEWVNTDVVKLRAAQDAAAQVV
KPARVPRERKPLPPADSAPMQQVETTRQP
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgttgttcaacgcgacgcagcaggaagagctgcgcgtcgccatcgtcgat
ggacagaagctcatcgacatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaac
atttacaagggcatcgtcacgcgcatcgagccgtcgctcgaagcgtgtttcgtcaactac
ggcgaggaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttccgcgaa
ggcatcgacatgcgcggcgcgcgcattcaggacgccctcaaggaaggccaggaactgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgccgccctcaccaccttcatctcg
ctcgccggccgctacctcgtcctcatgccgaacaacccgcgcggcggcggcgtctcgcgc
cgcatcgagggtgacgaccgtcaggagctgcgcgaaaccatggcgcagctgcaactgccc
gagggcatgagcatcatcgcgcgcacggccggcatcggccgctccgccgaagagcttcag
tgggacctgaactacctgctgcaactgtggcgcgccatcgaagccgcgtcgcaggccggc
cagtctggccagccgatgctgatctacctggaatcgagcctcgtcattcgcgcgatccgc
gactacttccagcccgacattggcgaaatcctcatcgacaccaccgagatctatgaccag
gcacgcgccttcatggatatcgtgatgccggacaatgtcaataaggtgaagcggtaccac
gatgacgtgccgctgttctcgcgtttccagatcgagcaccagatcgagacggcgtactcg
cgcacggtgccgctgccctcgggcggcgcgatcgtgatcgaccacaccgaagcactggtc
gccatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaaccgccgcg
cgcaccaacctcgaagccgccgacgaagtcgcgcgccagctgcgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgcgaagtcgag
cagcgcctgaaggacgcgctgcgccacgaccgcgcccgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctctcgcgtcagcgcctgcgcccggccctctcggaaggcagc
cacgtcacctgcccgcgctgtaacggcacgggtcatatccgcgatacggaatcgtcggcg
cttcaggtcctgcgcatcatccaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaagtgaccgccttcctgctcaacgaaaagcgcgccgagatcaac
aagatcgagtcgcgcttcaaggtcggcgtcgtcctgatcccgaacaagcacctcgaaacg
ccgcactacaagctcgagcgcctgcgtcacgacgacacccgcctcgacgacccgcgcgcc
tcctggaagatggctgaagaggccgcgcgcgagctcgagtcggagaccggttacagcaag
cgcaccgccgaagccaagccgaagcaggaagccgcggtgaagggcatcacgcccgagcgt
ccggcacccaccgcacaggtcaaaccggtcgaagccactcccgtgggcgcgccggttgca
gccgcgccggcaggcggcggcggcttcttcgcgttcatcaagcgtctctttggcggcgca
ccggctgcagcccccgctccggctccggtcgagcagcaggaaaaggccgcccgtccggca
cgcgaagcccgcaccgagcgcggcgagaaagccggcgctggggccggctccgccgaccgc
aaccgcaaccgccgcagcggcggccgcgacgcggccggccgtggcgaggccgcgggcggc
acgcgcaccggccagccgtcggcgcgccgcgaagaacgcgagccgcgtgaagcccgtgag
ggtcgcgaaggccgtgaaggccgcgccacccgcgagccgcgtgaaccccgcgaggcacgt
gaggcacgtgaatcccgtgagccgcgcgaacaacgcgaatcgcgtgaggcacgcgaaagc
cgcgagccccgcgccgagcgcgagcagcgcatcgagcgcgtcgagcgcggtcaggaacgc
agcgagaccgcagaagccgctccgcgcgccgagcgccaggagcgaggcgagcgccgtgag
cgcggcgaacgcgccgagcgtggcgaacgccgacgccagcagccggccgaagccgccgag
gcgcaggaagcacgcctcgacgccgccagcactgaagccgacaccgcggaagcagcccag
gccgccctcaccgacggcgtgacccacgccggtgccgaggacgacggcgcaacgccgcaa
ggtgaagagcgccgccgccgccgccgcggccgccgcggtggtcgccgcgagcgcgatgcg
gaaggcacgcaagggctcgaaggcgccgctgacgccgatgaaggcagcgacgaaagcacc
gacgaagcggctgttgcagcgcctgcgggcgagcatgctgccgagcacgtcgaagcccag
gctgaagcccgtgcgccggaagccgtcgttcacgcttccggtgccgaagctgtggtcgtg
accaccctgccggtcgcaaccgccgccgctgccgaagccgcacaagcggagcagccggcc
caaccggcgcaagtgatcgaaacgtcgtccgccgaaacgtcggtcgccgtgacggccacg
ccggtcgcgccggtcgagacccaggctgaggctgctgccgaagcggtggcgcctgctgtc
gcgccggttgcgccggtcgtcgagccggttgctgctgtcacgccggttgaagccgagccg
gcccagcctgtcgctgcgccggtggccgaagccgcaacgcctgcggcgcccgtcgtggaa
agcgctgctgccgaagcgctgcccgttcgcgaagaccgcgtcgaagcgccggccgcaccg
gctgccgagccggctgtcgtcgctcaacccgagccggtcgaaacgcgcgtcgaagcggtt
gtggcgcaggccgaaaccgcaacggtggttgtcgaaaccgcgacccagcgtcagacgcaa
gccggcgcggccgtcacggccgacacgctgcgtccgatgctggaatcggctggcctcgag
tgggtcaacaccgacgtcgtcaagctgcgcgccgcgcaggacgccgccgcgcaagtggtg
aagcccgcgcgtgtaccgcgcgagcgcaagccgctgccgccggccgacagcgcaccgatg
caacaggtggagacgacccgccagccgtaa
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