Paraburkholderia pallida: E1956_13620
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Entry
E1956_13620 CDS
T09864
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppai
Paraburkholderia pallida
Pathway
ppai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E1956_13620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppai03019
]
E1956_13620
Enzymes [BR:
ppai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E1956_13620
Messenger RNA biogenesis [BR:
ppai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E1956_13620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBQ98105
UniProt:
A0A4P7CQK6
LinkDB
All DBs
Position
1:complement(3005692..3007182)
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AA seq
496 aa
AA seq
DB search
MSDTAVKPSTETFDQFGLAPEILKAIKEQGYTTPTPIQAQAIPVVLTGRDVMGAAQTGTG
KTASFSLPILQRLLPLASTSASPARHPVRALILTPTRELADQVANNVRTYAQHTPLRSAV
VFGGVDMNPQSDELRRGVEILIATPGRLLDHVQQKTTQLGQVQMLVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVH
EGDKTGAVVQLIRDRGLKQVIVFCNSKIGASRLARQIEKQGIVAAAIHGDRSQNERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNEKKQLADIEKLIKRPLTVEHLVVDVPVAHHEGGSRRRERDGRDGRDSHEGRGERVG
HRRAGAYERPHHHRSAQPVDDFFLKPYEPSPSARSKADDNPAPAATTPQKQKQPLAALLG
GLGSSWRNKPTSSSSS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagccgtcaagcccagcaccgagaccttcgatcagttcggcctcgcgccc
gagatcctcaaggcgatcaaggagcagggctacacgacgccgacgcccatccaggcgcag
gccattcccgtggttctcacgggccgcgacgtgatgggcgccgcgcagaccggcaccggc
aagacggcgagcttttcgctgccgatcctgcaacgcctcttgccgctggcgagcacgagc
gcctcgcccgcccgccatccggtgcgcgcgctgatcctcacgcccacgcgcgaactggcg
gaccaggtggccaacaacgtgcgcacctacgcgcagcacacgccgctgcgcagcgcggtg
gtgttcggcggcgtcgacatgaatccgcaatcggacgagctgcgccgcggcgtggaaatc
ctgatcgcgacgccgggccgcctgctcgaccacgtgcagcagaagaccacgcaactcggc
caggtacagatgctcgtgctcgacgaagccgaccgcatgcttgacatgggcttcctgccc
gatctgcagcgcatcctgaacctgctgccgaaggagcgccagacgctgttgttctcggcc
acgttctcgccggaaatcaagaagctcgccgcgacctacctgcgcaacccgcagaccatc
gaagtggcgcgcagcaactccacggccaccaacgtcacccagatcgtctacgaagtgcat
gagggcgacaagaccggcgcggtcgtgcagttgatccgtgatcgcggcttgaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgtctcgcacgccagatcgagaagcag
ggtatcgtggccgccgcgattcacggcgaccgctcgcaaaacgagcgcatgcaggcgctc
gacgcgttcaagcgcggcgagatcgaggccctggtggccaccgacgtggccgcgcgcggc
ctcgacatcgccgagctgcctgccgtgatcaacttcgacctgccgttcaacgccgaagac
tacgtgcaccgcattggccgtacgggccgcgcgggggcctcgggcgatgcgctttcgctg
tgcagcccgaacgagaagaagcagctcgccgatatcgaaaagctcatcaagcgtccgctg
accgtcgagcacctcgtggtcgacgtgccggtcgcgcaccacgaaggcggcagccgccgc
cgggaacgtgatgggcgcgatgggcgtgacagccacgaagggcgcggcgagcgcgtcggc
caccgccgcgccggcgcctacgagcggccgcatcatcaccgttccgcgcagcccgtcgac
gacttcttcctgaagccttacgagccgtcgccgagcgcgcgcagcaaggccgacgataat
cccgcgccggcggcaaccacgccgcaaaagcagaagcagccgctcgcggcgctgctcggc
ggcctgggctcgtcgtggcgcaacaagccgacgtcgtcttcgtcgtcctga
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