Paraburkholderia pallida: E1956_28915
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Entry
E1956_28915 CDS
T09864
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppai
Paraburkholderia pallida
Brite
KEGG Orthology (KO) [BR:
ppai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppai03016
]
E1956_28915
Enzymes [BR:
ppai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E1956_28915
Transfer RNA biogenesis [BR:
ppai03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E1956_28915
Prokaryotic type
tRNA splicing ligases
E1956_28915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QBR01235
UniProt:
A0A4P7D3E5
LinkDB
All DBs
Position
3:complement(510784..512007)
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AA seq
407 aa
AA seq
DB search
MTELDYQVMELAHGKPVKMWTNGVAVEDDARTQLRNTAQLPFIFRHLAVMPDVHIGKGST
IGSVIPTKGAIIPAAVGVDIGCGMMAVRTTLVASDLPDSLVGLRSAIERAVPHGRSPGRR
DPGAWGKRAPAAVDELWKALQPGFRRIVDKYPKLEKTNHYAHLGTLGTGNHFIEVCLDES
DSVWFMLHSGSRGVGNAIGSLFIELAQHDMRQHIANLPDRNLAYFTEGSRHFDDYVEAVG
WAQDFARRNRQVMMDAVIGAARNVIGKPFGVDEHAVNCHHNYVQRERHYGEDVLVTRKGA
VSAQKGQLGIIPGSMGAKSFIVRGLGNPESFCSCSHGAGRTMSRTEAKRRFTVADQVRAT
EGVECRKDAGVVDEIPMAYKDIDAVMAAQSSLVEVVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaactggactatcaggtgatggaactggcgcatggcaagccggtgaagatgtgg
acgaacggcgttgccgtcgaggacgacgcgcgcacgcagttgcgcaacaccgcgcagctg
ccattcattttccggcacctcgcggtgatgccggacgtgcacatcggcaagggctcgacg
attggcagcgtgattcctacgaagggcgcgatcatcccggctgctgtgggcgtcgatatc
gggtgcggaatgatggcggtgcgtacaacgctggtggcttcggacctgccggactcactc
gtggggctgcgcagcgccatcgaacgcgcagtgccgcatggccgctcgccgggacggcgc
gatccgggggcttggggcaagcgtgcgccggctgccgtcgacgagctgtggaaagcgctg
caaccgggattccggcgcatcgtcgacaagtatccgaagctcgagaagacgaaccactat
gcgcatctcggcacgctcggcaccggtaatcacttcatcgaagtgtgtctcgacgaaagc
gacagcgtgtggttcatgctgcacagcggctcgcgcggtgttggcaatgcgattggcagc
ctgtttatcgaactcgcgcagcacgacatgcgtcagcatatcgcgaacctgccggatcgc
aatctcgcgtacttcaccgagggcagccggcacttcgacgactacgtcgaagccgttggc
tgggcgcaggatttcgcgcggcgcaaccggcaggtgatgatggacgcggtgatcggcgcg
gcgcgcaatgtgatcggcaagccgttcggcgtggatgaacacgcggtgaattgccaccac
aactacgtgcagcgggagcgccactacggcgaagacgtgctcgtgacgcgcaagggtgcc
gtctccgcgcagaaggggcaactcggcatcattccgggttcgatgggcgcgaagagcttc
atcgtgcgtgggctcggcaatccggagagcttctgctcgtgcagccacggtgcggggcgg
acgatgagccggacggaggcgaagcgccgcttcacggtcgcggatcaggtgagggcgacc
gaaggcgtggagtgccgcaaggatgcgggcgtggtcgacgaaatcccgatggcctataag
gatatcgatgcggtgatggcggcacagagcagtcttgttgaggtggtgcacacgctgcgt
caggtggtgtgtgtgaagggatga
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