Pyxidicoccus parkwayensis: JY651_05210
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Entry
JY651_05210 CDS
T09992
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppak
Pyxidicoccus parkwayensis
Pathway
ppak02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppak00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JY651_05210 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppak03021
]
JY651_05210 (rpoD)
Transcription machinery [BR:
ppak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JY651_05210 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_ner
Sigma70_r1_2
BLI1
Motif
Other DBs
NCBI-ProteinID:
QSQ24364
UniProt:
A0ABX7P250
LinkDB
All DBs
Position
complement(1323363..1325495)
Genome browser
AA seq
710 aa
AA seq
DB search
MPTQKPSKASVKPTKKKVDPVIRKKKAPESSATSSAKGTKAGAEEKEAVSAKDVVAEATD
KLKKKKGVTSAMSDDVDPEEAAEEAAAAVQVDPDAVEDDVEEDPVAERKEVKDLLAAGRE
KGFLTYDEVNDALPADIVSSDQIDDVMSMFGDNDIEIVDAQKAAQNNEIKPTVTVEEEKE
DADEDEKDEDDEPGGKSNDPVRLYLRKMGSVSLLTREGEVEIAKRIEEGEKEVLRALLAC
KVAVEEILDIGNKLKTAKLRVRDVIKDAPEEAQAEGGDEAPEEVGEGDAPAQLAQSELNK
IEQICKQIERFRKFAKDCEVLEEELASKKKLTEVRKKELKQEMKDLRTKMMEVLEEMRLN
KKQVDRIVINLKGLIERVDKAEDELRELERRYGISMKELRPQLKESRENPNIGKKLQKQL
NLTPEQLEVLDRDVRTAVRKIKKVEEEANLPVESLRRNYDAIRLGERRAERAKSELVEAN
LRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAI
ADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKE
PISLETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRF
GIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLRSFVES
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcagaagccctcgaaggcgtccgtgaagcccaccaagaagaaggtggatccg
gtgatccgcaagaagaaggctccggagagctccgcgacctcgtcggccaaggggacgaag
gcgggtgccgaggagaaggaggcggtgtccgcgaaggacgtcgtcgccgaggccaccgac
aagctcaagaagaagaagggcgtcacctccgccatgtccgacgacgtggacccggaggag
gccgcggaagaggcggccgcggccgttcaggtggaccccgacgccgtcgaggacgacgtc
gaggaggatccggtcgccgagcgcaaggaggtcaaggacctgctcgccgcgggacgtgag
aagggcttcctcacgtacgacgaggtcaatgacgcgctccccgccgacatcgtgtcgtct
gatcagatcgacgacgtgatgagcatgttcggcgacaacgacatcgagattgtcgacgcg
cagaaggccgcccagaacaacgagatcaagcccaccgtcaccgtcgaggaggagaaggaa
gacgccgacgaggacgagaaggacgaggacgacgagccgggtggcaagtccaacgacccg
gtgcgcctgtacctgcgcaagatgggcagcgtcagcctgctcacgcgcgagggcgaagtc
gaaatcgccaagcgcatcgaagagggcgagaaggaagtcctgcgcgcgctgctcgcctgc
aaggtggccgtggaggagatcctcgacatcggcaacaagctgaagacggccaagctgcgc
gtgcgcgacgtcatcaaggacgcgcccgaggaggcccaggccgagggcggcgacgaggct
cccgaggaggtcggcgagggcgacgccccggcgcagctcgcgcagtccgagctcaacaag
attgagcagatctgcaagcagatcgagcgcttccgcaagttcgccaaggactgcgaggtg
ctggaggaggagctcgcctccaagaagaagctgaccgaggttcgcaagaaggaactgaag
caggagatgaaggacctccggaccaagatgatggaggtcctggaggagatgcggctcaac
aagaagcaggtggaccgcatcgtcatcaacctgaagggcctcatcgagcgcgtggacaag
gccgaggacgagctccgcgagttggagcgtcgctacggcatctccatgaaggagcttcgc
ccgcagctcaaggagtcgcgcgagaatccgaacatcggcaagaagctgcagaagcagctc
aacctcacgcccgagcagctcgaggtcctggaccgcgacgtgcgcacggcggtgcggaag
atcaagaaggtcgaggaggaggccaacctccccgtcgagtcgctgcgccgcaactacgac
gccatccgcctgggtgagcgccgcgccgagcgcgccaagagcgagctggtggaggccaac
ctccgcctcgtggtctccatcgcgaagaagtacacgaaccgcggcctgcagttcctggac
ctcatccaggagggcaacatcggcctcatgaaggcggtggacaagttcgagtacaagcgc
ggctacaagttctccacgtacgccacgtggtggatccgccaggcgattacgcgcgccatc
gccgatcaggcccgcaccatccgcatcccggtgcacatgatcgagaccatcaacaagctc
atccgcaccagccgctacctcgtgcaggagattggccgcgagccgacgccggaagagatt
gcggagaagatggagctgccgctcgacaaggtccgcaaggtcctcaagattgcgaaggag
cccatctccctcgagacgccgattggcgaggaagaggacagccacctgggcgacttcatc
gaggacaagagcctcgtgtcgccggcggacgcggtcatcaacatgaacctggcggagcag
acccgcaaggtgctggccacgctcacgccgcgtgaggagaaggtcctccgcatgcgcttc
ggcatcggcgagaagagcgaccacacgctggaagaggtgggccaggacttcgaggtgacg
cgcgagcgcatccgccagattgaggccaaggcgctgcgcaagctgcgccacccgagccgc
tccaagcgcctgcgctccttcgtggagagctga
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