Pyxidicoccus parkwayensis: JY651_12545
Help
Entry
JY651_12545 CDS
T09992
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppak
Pyxidicoccus parkwayensis
Pathway
ppak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JY651_12545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppak03019
]
JY651_12545
Enzymes [BR:
ppak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JY651_12545
Messenger RNA biogenesis [BR:
ppak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JY651_12545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QSQ25702
UniProt:
A0ABX7P5E2
LinkDB
All DBs
Position
3197041..3198570
Genome browser
AA seq
509 aa
AA seq
DB search
MTFDELQLHDTLLRAVKAEGYTTPTPIQAKAIPEALAGRDVLGVAQTGTGKTAAFALPIL
QRLSAKAPAGGARPIRCLVLTPTRELAGQVGESFATYGKHLPLRHTVIFGGVGQNPQVQA
LRSGMDVLVATPGRLLDLMDQGFVSLRSLEVFVLDEADRMLDMGFIHDVRKVIKALPAKR
QTLFFSATMPPEIVELSRNILTNPVRVEVTPVSSTADTVSQQVYFVEREQKRGLLTHLLK
EGRIARALVFTRTKHGANRVAKQLEGAGVHAAAIHGNKSQNARERALDDFRSGSLRVLVA
TDIAARGIDIDGLSHVINYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDGEERAFLRDIE
RTIRRSVPVVEDHPYRPGRAGPRPVELASAPAEERERAPQGGNRNGGRGQAPQRAAGNGG
GGGGGGGGGHPSGSSRRRRGGRSGGGRGEQRFDGGRSSQGGGGGSNRANAPAQRGPSSHP
RPAAAAGQSAAKPAEAPPPRPSRPSPKWF
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgacgaacttcagcttcacgacaccctcctgcgcgcggtcaaggcggagggc
tacacgacgcccacgcccatccaggcgaaggccatccccgaggcgctggccgggcgggat
gtgctgggcgtggcgcagacgggcaccggcaagacggccgccttcgcgctccccatcctc
cagcggctctccgccaaggcgcccgcgggcggcgcgcggcccatccgttgcctcgtgctc
actcccacccgcgagctcgcgggccaggtgggcgaaagcttcgccacctacggcaagcac
ctcccgctgcgccacaccgtcatcttcggtggcgtgggtcagaatccgcaggtgcaggcg
ctgcgcagcggcatggacgtgctggtggccacgccgggccgcctcctcgacttgatggac
cagggcttcgtgtccctgcgctcgctcgaggtgtttgtgctcgacgaggcggaccgcatg
ctcgacatgggcttcatccatgacgtgcgcaaggtcatcaaggcgctgcccgcgaagcgg
cagacgctcttcttcagcgcgacgatgccgcccgaaatcgtggagctgtcgcgcaacatc
ctcacgaaccccgttcgtgtggaggtgacgcccgtctccagcaccgcggacacggtgagc
cagcaggtgtacttcgtggagcgcgagcagaagcgcggcctgctgacgcacctgttgaag
gagggccgcatcgcccgggcgctcgtcttcacgcgcaccaagcacggcgcgaatcgcgtg
gcgaagcaactcgagggcgcgggcgtgcatgccgcggccatccacggcaacaagagccag
aatgcgcgtgagcgcgcgctggacgacttccgctccggctcgctgcgcgtgctggtggcg
acggacatcgcggcgcgtggcatcgacatcgacgggctgagccacgtcatcaactacgac
ctgcccaacgtgcccgagcagtacgtgcaccgcatcggccgcaccggccgcgcgggcgcc
agcggcaccgcggtgtccttctgcgacggcgaggagcgcgcgttcctgcgcgacatcgag
cgcaccatccgccgcagcgtgcccgtggtggaggaccatccgtaccgtcccggccgcgcg
ggcccgcgtcccgtggagctggcttccgcgcctgccgaggagcgcgagcgggcgccgcag
ggtgggaaccggaatggtggccggggccaggccccgcagcgcgccgctggaaacggtggt
ggtggtggcggcggcggtggtggtggacatccctcgggttcctcgcgtcgtcgtcgtggc
ggccggagcgggggaggccgtggcgagcagcgcttcgacggcggccgctcctcgcagggc
ggtggtggcggctcgaatcgcgccaatgcgcccgcgcagcgtggcccgtcctcgcatccg
cgtccggctgctgcggcgggacagagcgcggcgaagcccgccgaggctccgccgccccgt
ccttcgcggccttcgccgaagtggttctga
DBGET
integrated database retrieval system
