Pyxidicoccus parkwayensis: JY651_16720
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Entry
JY651_16720 CDS
T09992
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppak
Pyxidicoccus parkwayensis
Brite
KEGG Orthology (KO) [BR:
ppak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppak03032
]
JY651_16720
03400 DNA repair and recombination proteins [BR:
ppak03400
]
JY651_16720
Enzymes [BR:
ppak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JY651_16720
DNA replication proteins [BR:
ppak03032
]
Prokaryotic type
DNA Topoisomerases
JY651_16720
DNA repair and recombination proteins [BR:
ppak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JY651_16720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
PACT_coil_coil
Motif
Other DBs
NCBI-ProteinID:
QSQ26470
LinkDB
All DBs
Position
4486060..4487175
Genome browser
AA seq
371 aa
AA seq
DB search
MLMHAEPTSPTTEPRKAERHRAQGETQLERLQRTGLRRLGTAKRGFHYVRADGKAASKAD
RERIEAMRLPPAWTQVSISPAHSARLQAVGMDAAGRWQYRYHATHRKRRDEAKFQRIVDF
ARALPRMRRRVNADLRKQGLGRDKVLACMLRILGTCFIRPGSQQYADEHGSFGLATLRRR
HVRVAGDTVTFDFPGKSGKHQHRQLKDRRVASIVRQLMKVPGRDVFKFVLDDGAVVDVRR
RHLNEYIQEVMGPGFSAKDFRTWAGTLICACALARARERVKKEAGGEDGLVKKTALKKTM
VAAVKEAAAHLGNTPAVAKSSYIYPSVLAMFERGQVVDRYFESVDELAATTSEGLHCSEK
ALLDMLDEAKH
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgcacgccgagcccacctcaccgacgacggagccccggaaggccgagcggcac
cgggcgcagggagagacgcagctcgagcggctccagcgcacgggcctgcggaggctgggc
accgcgaagcgcggcttccactacgtgcgcgcggacgggaaggcggcgtcgaaggcggac
cgcgagcgcatcgaggcgatgcggcttcctccggcgtggacgcaggtgtccatctccccg
gcccattccgcgcgcctgcaggcggtgggcatggacgcggcggggcggtggcagtaccgc
taccacgcgacgcaccggaagcggcgggacgaggcgaagttccagcgcatcgtcgacttc
gcgcgggcgctgccccggatgcggcggcgcgtgaatgcggaccttcgcaagcaggggctg
ggccgggacaaggtgctggcctgcatgctgcgcatcctcggcacgtgcttcatccgcccc
ggcagccagcagtacgcggacgagcatggcagcttcgggctggccacgctgcgcaggcgg
cacgtgcgcgtggcgggcgacacggtgacgttcgacttcccgggcaagagcggcaagcat
cagcaccggcagctcaaagacaggcgcgtggcgagcatcgtccgtcagttgatgaaggta
cccgggcgcgacgtcttcaagttcgtgctggatgacggcgccgtggtggacgtgcggcgg
cgccacctcaacgagtacatccaggaggtcatgggcccgggcttcagcgccaaggacttc
cgcacctgggctgggacgctcatctgcgcgtgcgcgctggcccgggctcgcgagcgcgtg
aagaaggaggccggtggtgaggacggcctcgtgaagaagaccgccctcaagaagaccatg
gtggccgcggtgaaggaggccgccgcgcacctgggcaatacgcccgcggtggcgaagtcc
tcgtacatctacccgtccgtgctggccatgttcgagcgtggccaggtggtggaccgctac
ttcgagtcggtggacgagctcgccgcgacgacgagcgagggcctccactgctcggagaag
gccctgctcgacatgctcgacgaggcgaagcactga
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