Pyxidicoccus parkwayensis: JY651_17785
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Entry
JY651_17785 CDS
T09992
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppak
Pyxidicoccus parkwayensis
Brite
KEGG Orthology (KO) [BR:
ppak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppak03016
]
JY651_17785
Enzymes [BR:
ppak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JY651_17785
Transfer RNA biogenesis [BR:
ppak03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JY651_17785
Prokaryotic type
tRNA splicing ligases
JY651_17785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QSQ26663
UniProt:
A0ABX7P829
LinkDB
All DBs
Position
complement(4820238..4821695)
Genome browser
AA seq
485 aa
AA seq
DB search
MEPSAEVQPPVTPRLRQVGPALYELDRSFREDMLVPARIVADEELLRQMARDRSIAQLVN
VTTLPGIQDFAIGMPDMHEGYGFPVGGVAGTLLPDGVISPGGIGFDINCGVRLLSTGLLH
DDVKDLIPELAHDLARSVPTGFGRHGRLALGPAQVDRVLTEGVPYVVRELRMGLEEDLRH
IESGGYLPGAEAAYVSVRARERGHDQLGTLGGGNHFIEVQRVDRILDAEAAADFGLFEGE
VTVLIHTGSRGLGHQVCTDAVREMDRALSRAGIRLVDRQLACAPFSSPEGQAYYASMCAA
ANFAWSNRQVLTHRVREVFGRRLGAEVQPRIVYDVAHNIAKVETYGGRRLCVHRKGATRA
FGPGNPELPEAWRKVGQPVFIPGSMGTSSFVLAGRSESQSVSFSSACHGAGRQMSRAAAK
REVVGAELRKALNARGIVVECPSNAELAEEAPTAYKDVERVVDAVDTAGIARKVARLVPV
AVLKG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgtccgccgaagtccaaccccccgtcacgccacgcctccgccaggtgggcccc
gcgctctacgagctggaccggagcttccgcgaggacatgctcgtgccggcccgcatcgtc
gccgacgaggagttgctccggcagatggcgagggaccggagcatcgcccagctcgtcaac
gtgacgacgctgccgggcatccaggacttcgccatcggcatgccggacatgcacgagggc
tacggcttccccgtgggcggcgtggccggcacgctgctgccggacggcgtcatctctccc
ggtggcatcggcttcgatatcaactgcggcgtgcggctgctgtccaccggactgctgcac
gacgacgtgaaggacctcatcccggaactggcgcatgacctcgcgcggagcgtccccacg
ggcttcggccggcatggccggttggccctgggaccggcgcaggtggaccgcgtcctcacc
gagggcgtcccctatgtcgtgcgcgagctgcgcatgggactggaggaggacctgcggcac
atcgagtcgggcggctaccttcccggcgcggaggctgcgtacgtctccgtgcgggcgcgc
gagcgggggcatgaccagctcgggacgctcggcggtggcaaccacttcatcgaggtgcag
cgcgtggaccgcatcctcgacgccgaggccgccgcggacttcgggctgttcgagggcgag
gtgacggtgctcatccacaccggctcgcggggactggggcaccaggtctgcacggacgcc
gtgcgggagatggaccgggccctgtcgcgcgcgggcatccggctggtggaccggcagctc
gcgtgcgcgccgttctcgtcaccggaggggcaggcctactacgcgtccatgtgcgcggcg
gccaacttcgcgtggtccaaccggcaggtgctcacgcaccgcgtgcgcgaggtgttcggg
cggaggctcggcgcggaggtgcagccacgcatcgtctacgacgtggcgcacaacatcgcg
aaggtggagacgtatggaggccggcgcttgtgcgtgcaccgcaagggcgcgacgcgagcc
ttcggtccaggcaaccccgagctgccggaggcgtggcgcaaggtgggccagccggtgttc
atccccggcagcatgggcacgtcctcgttcgtcctggcggggcggagcgagtcgcagtcc
gtgtcgttcagcagtgcctgccacggcgcgggccggcagatgagccgtgccgccgcgaag
cgcgaggtggtgggcgcggagctgcgcaaggcgctcaatgcccggggcatcgtcgtggag
tgcccgtccaacgcggagctcgcggaggaggcacccacggcctacaaggacgtggagcgc
gtggtggatgcggtggacaccgcgggcatcgctcgaaaggtggcgcggctggtgccagtc
gcggtgctcaagggctga
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