Pyxidicoccus parkwayensis: JY651_19980
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Entry
JY651_19980 CDS
T09992
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppak
Pyxidicoccus parkwayensis
Brite
KEGG Orthology (KO) [BR:
ppak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppak03019
]
JY651_19980 (hrpA)
Enzymes [BR:
ppak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JY651_19980 (hrpA)
Messenger RNA biogenesis [BR:
ppak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JY651_19980 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
AAA_25
AAA_30
NACHT
nSTAND3
Zeta_toxin
FtsK_SpoIIIE
Helicase_RecD
ResIII
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QSQ27052
LinkDB
All DBs
Position
5344100..5347810
Genome browser
AA seq
1236 aa
AA seq
DB search
MSGDSPVLAPSGLPTLRFPPELPISSRVEDITAAISAHQVVIVAGATGSGKTTQLPKVLL
AMGRGRPRQIGVTQPRRIAATSVAARVARELGTELGTDVGYQIRFEDRSSRQTAVKFMTD
GVLLAQIHSDPLLKRYDTIVLDEAHERSLTIDFLLGWLKRILPRRPDLKVVVSSATIETE
RFSQFFGGAPVIQVEGRTFPVDVLYEPPPEEDELADSVADAVANVLSLDPDGDVLVFLPG
EREIREAESALNARELRGTVVQPLYARLSAAEQSRVFATIPQRRVILATNVAETSVTIPG
IVYVVDTGVARLSRYDSRSGTTRLHIESISQASADQRKGRCGRVREGICVRLYDEASFTT
RPAFTDPEIKRTGLAGVILRMKSLGLGDVEDFPFLDPPQPKAIAEGWRVLEELGAIEGKE
RTLTPLGHQLARFPVDPRIARMILAGAEYGCLDEVLIVAAALNLQDPRERPRELAQKADE
LHRRFRDEHSDFTGLLKLWAFVREAEGRGTSHLRRVCRDNFLSFLRVREWRDVQRQLEET
VRELRLPRKGRGAPARGDVLHQALLTGLLSRIGQWNPEQRHYTGAKQTRFMVHPSSALAK
KPPAWAMAFELVETSQLFARTVAKLDPEWLAAAAPHLLKRSYSEPHWSEKSARAVVKENA
TLFGLQVFKERPVALAGMDPARARLMFLEHALVRGEYRTRGAFQEKNRQVLERVARLRDK
ARRSELLDSEALLTFFDQRLPEDVTDGASFEAWRRKAEAADPDVLVLSMEDALSHDPGLS
PAHYPDAITLHGASVPVTYTFDPAAEDDGITLSVPLLLLAQLVPGELDWTIPGWQREKLT
ALLEQLPRAQRKQLGPVPELVDRLEKELVPFRGPLIPALARAVSRLCGVDVPEESFRADA
VAPYLRITLRVLDERGKELARSRDADALLEQHGGRARTALRSAAPASDWERKGLTAWTFG
ELPAVVTRRVGGLDVRSYPALVDRGTAVDLVLLETSAAADAATRTGVRRLLMLAARGHVA
VSAARMPPPFPSLDGAPPARGQADAFRALVLARSVDDAFKLAPGAPLPRTKAAFEALVRE
GSPRIEQAARDWANAVVVTSSELAATLAALKAASKGPSGAAAVRDIRSQLGHLFPANLIE
WIPFVRLLNYPRYLLAAQARLSRAVANPAKDAGKAEPFTPLWESFLARRATVRDQEAAQE
LRWAFEELRVAIFAPEVTTPVSVTVAKVGAALTALR
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgactcacccgtcctcgcccccagcggcttgcccaccctgcgcttccccccc
gagctccccatctcgagccgggtggaggacatcaccgcggccatctccgcccatcaggtg
gtcatcgtcgcgggggccaccggctcggggaagacgacgcagctgccgaaagtcctgctc
gccatggggcgcggccgcccgcgccagattggcgtcacccagccccggcgtatcgccgcg
acgagcgtggcggcgcgcgtggcacgcgagctcggcacggagctgggcaccgacgtcggc
taccagattcgcttcgaggaccgctcgtcccggcagacggccgtgaagttcatgaccgac
ggcgtcctcctcgcgcagattcacagcgacccgctcctgaagcgctatgacaccatcgtg
ctcgacgaggcccacgagcgcagcctcaccatcgacttcctgctcgggtggctcaagcgc
atcctccccaggcgccccgacctcaaggtggtggtgagctcggccaccatcgagaccgag
cgcttctcgcagttcttcgggggagctccggtcatccaggtggagggccgtacctttccc
gtggacgtgctctacgagccgccccccgaggaagacgagctcgccgactccgtcgccgat
gcggtggcgaacgtgctctcgctcgacccggacggggacgtcctcgtgttcctccccggg
gagcgggaaatccgcgaggccgagagtgccctgaacgcacgcgagctccgcggcacggtg
gtgcagcccctgtatgcgcgcctgtcggccgccgagcagtcgcgcgtcttcgccaccatc
ccccagcgccgggtcatcctcgccaccaacgtcgcggagacgtcggtcaccatcccgggc
atcgtctacgtcgtggacacgggggtggcgcgcctgtcgcgctacgactcacgctcgggc
accacgcgcctgcacatcgaatccatctcccaggccagcgccgaccagcgcaaagggcgc
tgcggacgcgtgcgcgagggcatctgcgtgcgcctctacgacgaggcgagcttcaccacg
cggcccgccttcactgacccggaaatcaaacgcaccggactcgcgggggtcatcctgcgg
atgaagtccctcggcctcggtgacgtcgaggacttccccttcctcgacccgccccagccg
aaggccatcgccgagggctggcgggtgctcgaggagctcggggccatcgagggcaaggag
cgcaccttgacgccgctcgggcaccagctcgcgcgcttcccggtggacccgcgcatcgcg
cggatgattctcgccggcgccgagtacgggtgcctggacgaggtgctcatcgtcgccgcg
gcgctcaacctgcaggacccgcgcgagcggccacgggagctcgcgcagaaggcagacgag
ctgcaccggcgcttccgtgacgagcactcggacttcacggggctcctcaagctgtgggcc
ttcgtacgcgaggccgagggccgggggacgtcccatctgcggcgcgtgtgccgggacaac
ttcctgtccttcctgcgggtgcgcgagtggcgggacgtccagcgccagctcgaggagacc
gtccgtgagctgcgcctgccgcgcaagggccggggcgccccggcgcgcggggacgtcctg
caccaggcgctcctcaccggactcctgtcccgcatcggccagtggaatccggagcagcgc
cactatacgggcgcgaagcagacgcgcttcatggtccacccctcgtcggcgctcgcgaag
aagcccccggcctgggcgatggcgttcgagctcgtggagacgtcccagctgttcgcgcgc
accgtggcgaagctcgacccggagtggctcgcggcggcggccccccacctgctcaagcgc
agctactccgaaccgcactggtccgagaagtccgcgcgcgccgtggtgaaggagaacgcg
acgctcttcgggcttcaggtcttcaaggagcgccccgtggccctggccggcatggaccct
gcccgggcacggctgatgttcctcgagcatgccctggtgcgcggcgagtaccgcacccgg
ggggcgttccaggagaagaaccgccaggtgctcgagcgcgtggcgcgcctgcgggacaag
gcccggcgcagcgagctactcgacagcgaggcgctgctgacgttcttcgaccagcgcctc
cccgaggacgtgacggacggagcgagcttcgaggcgtggcgccgcaaggccgaggcggcc
gaccccgacgtgctcgtcctctcgatggaggatgccctctcgcacgacccgggcctgtcc
ccggcgcactacccggacgccatcaccctgcacggcgcgtccgtgccggtgacgtacacc
ttcgaccccgcggccgaggacgacggcatcaccctgagcgtgccgctgctgctgctcgcc
cagctggtccccggcgagctcgactggaccattcctggatggcagcgggagaagctcacc
gccctgctcgagcagctcccccgcgcccagcgcaagcagctggggccggtgccggagttg
gtcgaccgtctcgagaaggaactggtgcctttccgcggaccgctgattccagcgctcgcg
cgtgcggtgtcccggctatgcggcgtggacgtgcccgaggagtcgttccgggcggatgcc
gtggcgccgtacctgcgcatcacgctccgggtgctcgacgagcggggaaaggagctcgcg
cggagccgagatgccgacgcgctgctcgagcagcacgggggacgtgcacggacggcgctg
cgcagcgcggcaccggcttcggactgggagcgcaaggggctgacggcctggaccttcggc
gagctgcccgccgtggtcacccggcgcgtcggcgggctcgacgtccgcagctaccccgcg
ctcgtcgaccggggcactgccgtggacctggtgctgctcgagacctccgccgccgccgac
gcggccacgcgcacgggggtccgccggctcctgatgctcgccgcgcgcggacacgtggcc
gtcagcgccgcgcgcatgccgccgcccttcccgtccctggacggagcgccgcccgcgcgg
ggccaggccgacgccttccgggcgctcgtcctcgcacgcagcgtcgacgatgcgttcaag
ctcgcaccgggtgcgccgctgccccgcacgaaggcggccttcgaggcgctggtccgtgag
ggctcaccgcgcatcgagcaggcggcccgggactgggcgaacgccgtcgttgtcacctcc
tcggagctcgctgcgacgctcgccgcactcaaggcagcatccaaggggccgagcggcgcg
gcggccgtgcgggacatccgctcgcagctcgggcacctgttccccgcgaacctcatcgag
tggattcccttcgtgcgcctgctgaactacccgcgctacctcctcgcggcccaggcacgg
ctgtcgcgtgcggtggcgaaccccgccaaggatgcagggaaggccgagcccttcaccccc
ctgtgggagtccttcctcgccaggcgcgccaccgtgcgtgaccaggaggcggcgcaggag
ctgcggtgggccttcgaggagctccgcgtggccatcttcgctccggaggtgacgacgccc
gtatcggtgacggtggcgaaggtcggcgcggccctcacggcgctgcgctag
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