Pyxidicoccus parkwayensis: JY651_33925
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Entry
JY651_33925 CDS
T09992
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppak
Pyxidicoccus parkwayensis
Pathway
ppak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JY651_33925 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppak03400
]
JY651_33925 (mfd)
Enzymes [BR:
ppak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JY651_33925 (mfd)
DNA repair and recombination proteins [BR:
ppak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JY651_33925 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSQ20235
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All DBs
Position
8961333..8964917
Genome browser
AA seq
1194 aa
AA seq
DB search
MDTPPFSQLLDAEAARVPPAADPLVPLLDALHPGRRVRTQGLKGAARGHVLARLHQATKA
PLVCVAVDEEAADALAADLAFFLGGTGTLLEPRVLRLPADELLPFDELSPDTRTVTERLG
ALFHLGQGTRFPALVLSARALHRRVVPLPVMTSLAERVTVGQDFDRDSLALKLARMGYQN
SPLVEDVGTFSVRGGLLDVFSPLYDKPVRLEFFGDTIESIRAFDPQSQRTVDSLKEVSLV
PAREVILTDETRPRAEAAARAVADRINLPTIQLRERLEALREGLPGFGLEGLLPGLFEGG
LSTVFDFLRAWSKESPVVYVDDPLGVDRAVDELWSELERSFTAAQERQDLVCPPAEHFLT
RDAVNERLGAYRVVEGGGLSLAQSERPPVLFNFGGTQDLREAILAHHGEEGALSPLVERL
QRWRDMRVACAVACGTLSQADRLKRLLLDRNVMVKVHTEALVDASTLYEPSVWVHLFTGE
VSHGFVDGAGGLAVLADEEIFGVRTRRRPKRSKKLDAFASGFGDLKEGDLIVHTDFGIGR
YAGLTKMEVNGVPGDFLVLEYAGRDKIYLPVGRMRLIQKFSGGDPDKVQLDKLGTTSWEK
TKKRVKEQLLKMAAELLQIAAARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDV
LADMQKSQPMDRLVCGDVGYGKTEVAMRAAFKASLDRKQVAVLVPTTVLAQQHFLSFKKR
FKDYPVTVEVISGMKKAPEVREILKRAKEGKVDILIGTHKLLAGEVAFKDLGLMIVDEEQ
RFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPEDRRAIRTFVMK
YDEAVVKEAIEREVGRGGQVFFVHNRVESLPSMEQQLKTLVPHLSIGVAHGQMGEGQLEK
VMLEFTERKHHVLLCTSIIESGIDISSANTMIVNRADQFGLAQLYQLRGRVGRSKERAYA
YLLVPSRRAVTKDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLLGDKQSGAIAEIGF
DMYAQLLEEAVAEMQGQPPRVQVEPDVTLPMPALIPDDYVSDVHQRLLFYKRFSQASHPD
EVTDLRAELVDRYGEAPDEVDSLSELTLLKIDMRDLRLRALEVGTGRLVVTLGADALLDG
AKVAGLVQRSKGVYRLTPDMKLIVRVPQGASGHDLIAEAKKVLRDLGHCALPQA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggacactcctcccttctcccaactgctggatgccgaggcggcgcgtgtgcctccggcg
gcagaccctctcgtcccactcctcgatgcgctccaccctggccgccgcgtgcggacacag
gggctgaagggcgccgcgcgcggccacgtgctggcgcgcctgcaccaggcgacgaaggcg
ccgctcgtctgcgtggcggtggacgaggaggcagccgacgccctggccgccgacctggcc
ttcttcctgggcggcaccggcaccctgctggagccgcgcgtgctgcgactgcccgcggac
gaactgctgcccttcgacgaattgtctcctgacacgcgcaccgtcaccgagcggctgggc
gcgctcttccacctgggccagggcacgcgcttccccgcgctggtgctgtccgcgcgcgcg
ctgcaccgccgcgtggtgccgctgccggtgatgacgtcgctggccgagcgcgtgacggtg
gggcaggacttcgaccgcgactcgctggcactgaagctcgcgcgcatgggctaccagaac
agcccgctggtggaggacgtgggcacgttctccgtgcgcggcggcctgctggacgtcttc
agcccgctctacgacaagccggtgcgcctggagttcttcggcgacacgattgagtccatc
cgcgcgttcgacccgcagtcgcagcgcacggtggactcgctgaaggaggtgtcgctggtg
ccggcgcgtgaggtcatcctcaccgacgagacgcgcccgcgcgccgaggccgccgcgcgc
gcggtggcggaccgcatcaaccttcccaccatccagttgcgggagcggctggaggcgctg
cgcgagggcctgcccggcttcgggctggagggcctgctgcccggcctcttcgagggcggc
ctgtccacggtgttcgacttcctgcgcgcgtggagcaaggagtcccccgtcgtctacgtg
gacgacccgctgggcgtggaccgcgcggtggatgagttgtggtcggagctggagcgctcc
ttcaccgccgcgcaggagcggcaggacctggtgtgcccgcccgccgagcacttcctcacg
cgcgacgcggtgaacgagcggctgggcgcctacagggtggtggagggcggcggcctgtcg
ctggcgcagtcggagcggccgccggtgctcttcaacttcggcggcacccaggatttgcgc
gaggcgattctggcgcaccacggcgaggagggcgcgctcagcccgctggtggaacgcctg
cagcgctggcgcgacatgcgggtggcgtgcgcggtggcgtgcggcacgctgagccaggcg
gaccggctcaagcggctgctgctggaccgcaacgtcatggtgaaggtgcacaccgaagcg
ctggtggacgcgtcgacgctgtacgagccgtccgtctgggtgcacctcttcacaggcgag
gtgagccacggcttcgtggatggcgcgggcgggctggccgtgctggcggacgaggagatt
ttcggcgtccgcacgcgcaggcgccccaagcgcagcaagaagctggacgcgttcgcctcc
ggcttcggcgacctgaaggaaggcgacctcatcgtccacaccgacttcggcatcggccgc
tatgcgggcctgacgaagatggaggtgaatggcgtgcccggggacttcctcgtcctcgag
tacgcgggccgcgacaaaatctacctgccggtgggccgcatgcggctcatccagaagttc
tccggcggcgacccggacaaggtgcagctcgacaagctgggcaccacgagctgggagaag
acgaagaagcgcgtcaaggagcagctcctcaagatggcggcggagctgttgcagattgcc
gccgcgcgcaaggcgcacccgggccatgccttcagcgcgccggaccggtacttcgcccag
ttcgaggcggacttcgaattcgaggagacgccggaccaggccaaggcgattgaagacgtg
ctggcggacatgcagaagtcgcagcccatggaccggctcgtgtgcggcgacgtgggctac
ggcaagacggaagtcgccatgcgcgccgccttcaaggcctcgctggaccgcaagcaggtg
gcggtgctggtgcccaccacggtgctcgcgcagcagcacttcctctccttcaagaagcgc
ttcaaggactaccccgtcacggtggaggtcatctccggcatgaagaaggcgccggaggtg
cgcgaaatcctcaagcgcgccaaggagggcaaggtcgacatcctcatcggcacgcacaag
ctgctcgccggtgaggtggccttcaaggacctgggcctgatgattgtcgacgaggagcag
cgcttcggcgtgaagcagaaggagtcgctgaagaagtggcgctcgcaaatcgacgtgctg
acgctgacggcgacgcccattccccgcacgctgcacatgagcatgtccggcgtgcgcgac
atgagcatcatcgccacgccgccggaggaccgccgcgccatccgcaccttcgtcatgaag
tacgacgaggccgtcgtgaaggaggcgattgagcgcgaggtggggcgcggcggtcaggtg
ttcttcgtgcacaaccgcgtggagtcgctcccctccatggagcagcagctcaagacgctg
gtgccgcacctgagcatcggcgtggcgcatggacagatgggcgagggccagctggagaag
gtcatgctggagttcaccgagcgcaagcaccacgtgctcctgtgcacctccatcatcgag
agcggcatcgacatctccagcgccaacacgatgattgtgaaccgcgcggaccagttcggc
ctcgcgcagctctaccagctgcgcgggcgcgtgggccgcagcaaggagcgcgcgtacgca
tacctgctggtgccgtcgcggcgcgcggtgacgaaggacgcgcagcggcgcctggaggtg
ctccagaacttcaccgagctgggcgcgggcttctccatcgccagccatgacttggagatt
cgcggcgcgggcaacctgctgggcgacaagcagtcgggcgccatcgcggagattggcttc
gacatgtacgcgcagctcctggaggaagcggtggcggagatgcagggccagccgccacgc
gtccaggtggagccggacgtcacgctgcccatgccggcgctcatcccggacgactacgtg
agcgacgtgcaccagcggctgctcttctacaagcgcttcagccaggccagccaccccgac
gaagtcaccgacttgcgcgccgaattggtggaccgctacggcgaggccccggacgaggtg
gactcgctgtccgagctgactctgctcaaaatcgacatgcgtgacttgcggctgcgcgcg
ctggaggtgggcaccggccggctggtggtgacgctgggcgcggacgcgctgctggacggc
gcgaaggtggcggggctggtgcagcgctcgaagggcgtctaccggctcaccccggacatg
aagctcatcgtccgcgtgccccagggcgccagcgggcatgacctcatcgcagaggcgaag
aaggtgctgcgcgacctgggccactgcgccctgccgcaggcgtag
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