Pyxidicoccus parkwayensis: JY651_38915
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Entry
JY651_38915 CDS
T09992
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ppak
Pyxidicoccus parkwayensis
Brite
KEGG Orthology (KO) [BR:
ppak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppak03032
]
JY651_38915 (gyrB)
03400 DNA repair and recombination proteins [BR:
ppak03400
]
JY651_38915 (gyrB)
Enzymes [BR:
ppak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
JY651_38915 (gyrB)
DNA replication proteins [BR:
ppak03032
]
Prokaryotic type
DNA Topoisomerases
JY651_38915 (gyrB)
DNA repair and recombination proteins [BR:
ppak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JY651_38915 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_insert
GyrB_hook
VMAP-M2
HATPase_c_3
Microp_apicomplexa_7
Toprim_4
GCP_C_terminal
Motif
Other DBs
NCBI-ProteinID:
QSQ21120
LinkDB
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Position
complement(10150004..10152457)
Genome browser
AA seq
817 aa
AA seq
DB search
MEKTPATGAAVAPPPVEYGTDSITKLEGREAVRKRPGMYIGDTMTYGLHKLVYEVVDNSV
DEALAGHCTDIEVVIHVDGSLSVQDNGRGIPVGPHPDPKFKGKDTLEIVLTELHAGSKFG
NGAYKVSGGLHGVGVTCVNFLSEWFKVRVQTKGKVYEHSYERGIPTGPVQEVGSTDKRGT
YIAFKPDTTVMETVDFNFETLSQRLRELAFLNAGLHITVRDLRTNKEHDFKFDGGIASFV
EYLNKSKEVLHDKPIAFSTEREGVTLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFK
AALTRTLNSYAEKGGQWKDLKETPTGEDAREGLSAVISVKLPNPQFEGQTKTKLGNSEVK
GLVEQMVNDQLATFLEETPMVAKKVVAKIGDACRARIAARKARETVRRKGVLDGGGLPGK
LADCQSRDPNESELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAE
IVTLITALGTGIGAEDYDPEKARYHRIILMTDADVDGSHIRTLLLTFFFRQMPELLQKGY
LYIAQPPLYKVTRNKKDMYVKDERALNEYLLRTASEHSRVLTPGGELGGAELKALLEKVI
TYEERLEKQSKRRDARVVDALVQATRMTAETLTDEAAIQAAVKDAYAYFERRMPDVLGRV
KHDVVQDPEHHTKKLVFRTDVNGAMRESVFDHAFLSSPEYVDLAALRDAFAALGKAPYKV
KVEAGEVTVFSVQEVLAAMRKDAQKGLGLQRYKGLGEMNPEQLWETTMNPATRTLLQVRV
EDAVESDEIFSLLMGEAVEPRREFIERNALDVQNLDI
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagacccccgctaccggcgcagcggtcgccccgccgcccgtggagtatgggact
gacagcatcaccaagctcgagggccgcgaagcggtccggaagcgccccggcatgtacatc
ggcgacaccatgacctacgggctccacaagctcgtgtacgaggtcgtggacaactcggtg
gacgaggccctggcggggcactgcacggacatcgaggtggtcatccacgtggatggctcc
ctcagcgtgcaggacaacggccgcggcattcccgtgggtcctcacccggacccgaagttc
aagggcaaggacacgctggaaatcgtcctcaccgagctgcacgccggcagcaagttcggc
aacggggcctacaaggtctccggcggcctgcacggcgtgggcgtcacctgcgtgaacttc
ctctccgagtggttcaaggtccgcgtccagaccaagggcaaggtctacgagcactcctat
gagcgcggcatccccaccggccccgtgcaggaggtgggctccaccgacaagcgcggcacg
tacatcgccttcaagccggacaccacggtgatggagacggtggacttcaacttcgagacg
ctgagccagcgcctgcgcgagctggccttcctcaacgccggcctgcacatcaccgtccgc
gacctccgcacgaacaaggagcacgacttcaagttcgacggcggcatcgcgtccttcgtg
gagtacctcaacaagtcgaaggaggtgctgcacgacaagccgattgcgttctccacggag
cgcgagggcgtcacgctcgacatcgcgatgcagtggaatgacggctacgacgagcgcatc
tacaccttcgcgaacaacatcaacacccacgagggtggcagccacctgtccggcttcaag
gccgcgctcacgcgcacgctgaacagctacgcggagaagggtggccagtggaaggacctc
aaggagacgcccaccggcgaggacgcccgcgagggcctgtccgcggtcatctccgtcaag
ctgcccaacccgcagttcgagggccagacgaagacgaagctgggcaacagcgaggtgaag
ggcctggtcgagcagatggtgaatgaccagctcgccaccttcctcgaggagacgccgatg
gtcgccaagaaggtcgtggcgaagattggcgacgcctgccgtgcccgcatcgccgcccgc
aaggcgcgcgagacggtgcgccgcaagggcgtgctggacggaggtggtctccccgggaag
ctcgcggactgtcagagcagggatccgaacgagagcgagctctacatcgtcgagggtgac
tccgcaggcggctccgcgaagcagggccgtgacaggcgcaaccaggccatcctcccgctg
cgcggcaagattctgaacgtcgagaaggcgcgcttcgagaagatgctgacgagcgccgaa
atcgtgacgctgattaccgcgctgggcacgggcatcggcgccgaggactacgacccggag
aaggcgcgctaccaccgcatcatcctgatgacggacgcagacgtggacggcagccacatc
cgcacgctgctgctcacgttcttcttccgccagatgccggagctgctccagaaggggtac
ctctacatcgcgcagccgccgctctacaaagtgacgcgcaacaagaaggacatgtacgtc
aaggacgagcgcgcgctgaacgagtacctgctgcgcaccgcttccgagcactcgcgcgtg
ctgacgcctggcggcgagctgggtggcgcggagctgaaggcgctgctggagaaggtgatt
acgtacgaggagcgcctggagaagcagtccaagcgccgtgacgcgcgggtggtggacgcg
ctggtgcaggccacgcggatgacggcggagacgctgacggacgaggcggccatccaggcg
gcggtgaaggacgcctacgcctacttcgagcggcgcatgccggacgtgctgggccgcgtg
aagcacgacgtggttcaggaccccgagcaccacaccaagaagctggtgttccgcacggac
gtgaatggcgcgatgcgcgagtcggtgttcgaccacgccttcctgtcctctcccgagtac
gtggacctggccgcgctgcgggatgccttcgccgcgctgggcaaggcgccgtacaaggtg
aaggtggaggccggtgaggtgacggtcttctccgtgcaggaggtgctggccgccatgcgc
aaggacgcgcagaagggcctgggcctgcagcgctacaagggtctgggcgagatgaacccg
gagcagctctgggagaccaccatgaacccggctacgcgcacgctgctccaggtgcgggtg
gaggacgcggtggagagcgacgaaatcttctcgctgctgatgggcgaggcggtggagccg
cgtcgcgagttcatcgagcgcaacgcgctcgacgtgcagaacctggacatctga
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