Polynucleobacter paludilacus: AOC06_02165
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Entry
AOC06_02165 CDS
T08333
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ppal
Polynucleobacter paludilacus
Pathway
ppal03030
DNA replication
ppal03430
Mismatch repair
ppal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOC06_02165
03430 Mismatch repair
AOC06_02165
03440 Homologous recombination
AOC06_02165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppal03032
]
AOC06_02165
03400 DNA repair and recombination proteins [BR:
ppal03400
]
AOC06_02165
Enzymes [BR:
ppal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AOC06_02165
DNA replication proteins [BR:
ppal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AOC06_02165
DNA repair and recombination proteins [BR:
ppal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AOC06_02165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
RNase_H_2
DNA_pol_A_exo1
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
QWD87408
LinkDB
All DBs
Position
380305..381702
Genome browser
AA seq
465 aa
AA seq
DB search
MGSGKSYPALAFVDIETTGSNFERDRITEIAVKTLYEDRIEVWESLLNPQVFIPNNIQQL
TGISPQMVQNQPEFSELAKEIYSQLEDKIFVAHNARFDYGFIKASFKRIGIDFKPRVLCT
VKLSRHLFPEQKRHNLDTLIQVHDLKVSSRHRALGDAELLHQFWQVCEARFGKEKLLGAI
DVLTANASLPSHIDKELINQIPDKPGVYIFYAENKAPLYIGKSINMRTRVLSHFHSNLTN
RKEMKLALQVKDIDWIETSGEMGALLLESQLIKERLPALNIKLRRSKDLCAWQLQDHDGV
MTPVLVSHRDLQPGVQENLYGLFCSKREAHQCLQSLAKRHRLCELTLGLEKSAVKKACFG
YHVKQCNGVCVGQEEVKLHNLRLMTALEAFKVKIWPYPGPIAIVEGEAMHVVDRWCYLGS
AMNEAELYELATEGEAEFDLDIYKILKKQLSSIPNRQIVSLARTQ
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgggaagcggtaaatcgtatccagcgctagcctttgtggatattgaaactacgggctcc
aatttcgagcgagaccgcattactgagattgccgtcaaaacactttatgaggatcgcatc
gaagtttgggaaagcctgcttaatccacaagtatttataccgaataatatccagcagctc
acggggatttctccgcagatggttcagaatcaaccagagttttcagagctggctaaagag
atctatagtcaactcgaggataagatttttgtggcacacaatgcccgttttgattatggt
ttcatcaaagcctcattcaaaagaatcggaatcgatttcaagcccagggtgctctgcact
gttaagctctctagacatctctttcctgagcaaaaaagacataatctagatacgctcatt
caggtgcatgacctcaaagtgagctcgcgacatcgggccttaggtgatgcagagctatta
catcagttttggcaggtttgtgaagctagatttggcaaggaaaaattactcggcgcgatt
gatgtattgaccgcaaatgcgagcttgccaagccatattgataaagaattaattaatcaa
attccggataagccgggtgtttatattttttatgcagaaaataaagcccctctatatatt
ggtaaaagtatcaatatgcgtactcgggtattgagtcattttcatagcaaccttacgaat
cgtaaagagatgaagctggctttgcaggtgaaagatattgactggattgaaactagcgga
gaaatgggagccttgctactggagtctcaactgattaaggagcgacttcctgctctaaat
atcaaattaaggcgctctaaggatttatgcgcttggcaattgcaggatcatgatggggtc
atgacccccgtcttggtcagccatcgcgatctacaaccaggtgttcaagaaaatctatac
ggactcttttgcagcaagagagaagcgcatcaatgtcttcagtccttagccaagcgccat
cggctctgtgagcttacgctgggactagaaaagtcagccgttaaaaaagcttgctttgga
taccatgtaaagcaatgcaacggggtctgtgtgggacaagaagaggtcaaacttcataat
ctgcgactcatgactgcccttgaggcctttaaagtgaagatatggccctatcctggccca
atcgccattgtggagggagaggcaatgcacgtggtagatcgttggtgttacttgggctcc
gcaatgaatgaggctgagctctacgagttagcaactgagggtgaagcggagtttgatttg
gatatctataagattctaaaaaaacagctgagctccatcccgaatcgccagattgtttcc
ttggcacgtacgcaatga
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