Polynucleobacter paludilacus: AOC06_02255
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Entry
AOC06_02255 CDS
T08333
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppal
Polynucleobacter paludilacus
Pathway
ppal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOC06_02255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppal03019
]
AOC06_02255
Enzymes [BR:
ppal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AOC06_02255
Messenger RNA biogenesis [BR:
ppal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOC06_02255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QWD87424
LinkDB
All DBs
Position
392807..394267
Genome browser
AA seq
486 aa
AA seq
DB search
MTNTPTEISTESTPQATITFADFGLDPLIQKAVSEQGYTSPTPIQAQAIPHVLLGQDLMG
AAQTGTGKTAAFVLPIIQRILRHASSSASPARHPIRALVLTPTRELAVQVAENAANYSRY
TDLRSAVVYGGVDMKEQVATLRGGIEILIATPGRLLDHIGSKVANLSQVELLVLDEADRM
LDMGFLPDLQRIINLIPAQRQTLLFSATFSPEIKKLAQSYLRNPVTVEVARQNAAADTVR
QVIHMVRSGDKEKAIVKILAARTEQGLSRQCIIFTNSRMGCGRLARALERDGIKAGAIHG
DKSQGERTLTLDAFKSGAIEALVATDVAARGLDIPAMPCVINHELPFNAEDFIHRIGRTG
RAGSTGDAIALVDDSEKRLLDDIEKLMKRKLDIVPLPNIDIPGGQESDYEPRHRSPRSTR
ETSQRSYSTPKSSPAPAADPFFSMPYESSKTVNQAENTDAQPEVKKVGIVPAKAPVGALL
GGFKKK
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
ttgactaatacccctaccgaaatttctactgaatctactccccaagcaacaatcaccttt
gctgattttggcttagacccgctcattcaaaaagcggtatctgaacagggctacaccagc
ccgactcctattcaagcgcaagccattccccatgttttattggggcaagacttgatgggc
gctgcccagaccggtactggcaagacggccgcattcgtattgcctatcattcagcgcatt
ctgcgccatgcaagcagcagtgcttcacctgctaggcatcccattcgggccttggtgctg
acaccgacccgcgagttagcagtgcaagttgcagagaacgcagcaaactattctcgttat
actgatttacgttcggccgtggtctatggcggtgtggatatgaaagagcaagtagccacc
ttgcgaggcggtattgagattttgattgccacgcctggtcgcctcttggatcacattggc
tctaaagtggccaacctttctcaagtagaactcttagtgttggatgaggcagatcgaatg
ctggacatgggcttcctacccgatctacagcgcatcatcaatttgattccagcccagcgt
caaactttattgttctcagctactttctcaccagagattaaaaaactggcgcagagctat
ttgcgtaatcctgtgacggttgaggttgctagacaaaatgctgctgccgataccgtacgc
caagtgattcatatggtgcgatcgggtgataaagaaaaggccattgtgaagattttggct
gcacggacagagcaaggtttatcccgtcagtgcatcatctttaccaatagtcgtatgggt
tgtggcagattggcgcgggctctagaacgtgacggcattaaagccggtgcgattcatggt
gataagagccaaggcgaacggactctaactttggatgcatttaagtcgggcgcgattgaa
gccttggttgcaaccgacgtggcagcgcgtggcttagatatcccagcaatgccctgcgtg
attaatcatgagttgccgtttaatgccgaagactttattcaccggattggccgcaccgga
cgtgcgggcagtactggtgatgcgattgccttagttgacgatagtgaaaaacgcttgctc
gacgatatcgagaagttaatgaagcgcaagttagatattgttccattgcctaatatcgat
attcctggcggtcaggaatctgactatgagcctagacatcggtcgcctcgatcgactcgt
gagacttctcagagatcgtattcaacaccaaagtcatcgccagcgcctgctgctgatcct
ttcttttccatgccttatgaatcttcgaagacagtcaatcaagcagaaaatacggatgct
cagccagaagtcaaaaaggtgggcattgttcctgccaaagctccagtaggtgccttgctc
ggcggcttcaagaagaagtaa
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