Polynucleobacter paludilacus: AOC06_02805
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Entry
AOC06_02805 CDS
T08333
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
ppal
Polynucleobacter paludilacus
Pathway
ppal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOC06_02805 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppal03400
]
AOC06_02805 (uvrB)
DNA repair and recombination proteins [BR:
ppal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOC06_02805 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AOC06_02805 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
Kinesin
UB2H
FlaG
Motif
Other DBs
NCBI-ProteinID:
QWD87870
LinkDB
All DBs
Position
510552..512600
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AA seq
682 aa
AA seq
DB search
MDPAKFVTYPDSPYQLYQPFPPAGDQPQAIEKLVEGIEDGLVFQTLLGVTGSGKTFTMAN
VIARTGRPAIIFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEK
DSSINEHIEQMRLSATKSLLERRDVIIVATVSAIYGIGNPGDYHSMVMTLRPGDKMSQRD
ILVRLIAMQYDRNELDFKRGVFRVRGDTIDIFPAEHNELAIRVELFDDVIESLQFFDPLT
GRIRQKIPRFTVYPSSHYVTPRETVLKAIETIKTELRDRLDEFVKDGKLVEAQRLEQRTR
FDLEMLNELGFCKGIENYSRHLSGAKPGEAPPTLVDYLPNDALMFLDESHVLIGQLNAMY
NGDKSRKHTLVEFGFRLPSAMDNRPLKFTEFETKMRQTIFVSATPADYEGQHTGQVVEQV
ARPTGLVDPEIEVLPASSQVDDLLGQIHERVKVGERVLVTVLTKRMAEQLTDYLSDNGVK
VRYVHSDIDTVERVEILRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSE
RSLIQTIGRAARNVRGKAILYADRITDSMRRAMGETERRRTKQIAFNKEHGIEPRGVTKR
IKDIIDGVYDVGEKRIELQAAEERARYEDMSEKDLAAEIKRLEKQMNSEAKNLEFEKAAS
TRDRLSKVKEMAFGALSHDSLG
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
ctggatccagcgaagtttgtgacctacccagattcaccatatcagctctaccagcctttc
ccaccagcaggggatcaaccccaggctattgagaagttggtcgaggggattgaggatggt
ttggtgtttcagacgctcttgggggtcacaggttccggcaagacttttacgatggccaat
gtgattgccagaacggggcgtccagccatcattttcgctccgaataaaaccctagctgca
caactctacagtgagttccgagagttctttcctcgtaatgcagtggagtatttcgtgagc
tactacgactactaccaacctgaagcatatgtgccgcagcgtgatctgtttattgaaaaa
gattcttcgatcaatgaacacatcgaacagatgcgtttgtcggcaaccaagagtttgctc
gagcgacgcgacgtcattattgttgcaacggtatcggcgatctacggcattggcaacccg
ggtgactatcacagcatggtcatgactctgcggcctggcgacaagatgagtcagcgcgat
attttggtgcgcttgattgccatgcaatacgaccgcaatgaactcgatttcaagcgtggc
gtctttagggttcgtggcgataccattgatatttttccggctgagcataatgaacttgcg
atcagggtagagctctttgatgatgtgattgagagtttgcaattctttgatccattaaca
ggacgcattcgtcaaaagattcctcgctttactgtctaccctagctcacactacgtcact
ccccgcgagacagtgctcaaggcgattgaaacgattaagactgagttacgcgatcgcctt
gatgaatttgtaaaggatggcaagttggttgaggcgcaacgtctagagcagcgcactcgc
tttgatctcgagatgctcaatgagttgggcttctgtaaggggattgagaattactcccgc
catctctctggagcaaagccgggtgaggctccaccgaccttggtcgattacttacctaat
gatgctttgatgtttttggacgagagtcatgtcctgattggacaacttaatgcgatgtac
aacggggataagtcacgtaagcatacgctggttgagtttggcttccgtttgccatcggca
atggataaccgacccttgaagttcaccgaatttgaaaccaagatgcgtcaaaccattttt
gtttctgcgacaccagccgattacgagggtcaacacactggacaagttgtcgagcaagta
gcacgcccaaccggattagtggatcctgaaatcgaagtcttacctgccagctcacaagta
gacgatctcttgggtcagattcatgagcgagtgaaggtcggtgagcgtgttttggtaact
gtactcactaaacgcatggccgagcaactcactgactacttatcagacaacggtgtgaag
gtgcgttatgtgcactctgacattgataccgtagagcgggttgagattctgcgcgacctg
cgtttgggtgtgttcgatgtcttggtcggtattaatttattacgcgaaggtttggatatt
cctgaagtatctttggtcgcgatcttggatgctgacaaagaaggcttcttgcgttctgag
cgtagtttgattcagacgattggacgagccgcccgaaatgttcgtggtaaagcgattttg
tatgccgatcggatcaccgattccatgcggcgtgcgatgggagagactgagcgacgcaga
acgaagcaaattgcgtttaataaagagcatggtattgagccacgtggtgtcactaagcgc
atcaaggacattattgatggtgtctatgacgtaggtgagaagcggattgagctccaagct
gctgaagaacgcgcccgctatgaggatatgtctgaaaaagacttggccgctgaaattaag
cgtttagagaagcaaatgaactctgaggccaagaacctcgaatttgagaaagcggccagc
acccgagatcgcctctccaaagtcaaagaaatggcatttggggccctttctcatgactcc
cttggctaa
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