Pteronotus mesoamericanus (Parnell's mustached bat): 129067333
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Entry
129067333 CDS
T09558
Symbol
SKIC2
Name
(RefSeq) SKI2 subunit of superkiller complex protein isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ppam
Pteronotus mesoamericanus (Parnell's mustached bat)
Pathway
ppam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129067333 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppam03019
]
129067333 (SKIC2)
Enzymes [BR:
ppam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129067333 (SKIC2)
Messenger RNA biogenesis [BR:
ppam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129067333 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
129067333 (SKIC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
129067333
NCBI-ProteinID:
XP_054425112
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MMERERLVLPSSDPLDLPLRAVELGCSGRWELVNVPGAPESTLPHSLLPCALDLQQEAEQ
LFLSSPAWLPLHDLEHSARKCQRKMDPWALLALVGAPVPSDLQAQRHPTTGHILGYKEVL
LENTDLSATTSLSLRRPPGPISQPLWGNPTQYPFWPGGMDEPTITDLSTQVEAEEEIDFE
RDLLTIPPGFKKGVDFAPKDHPAPAPGLLSLSHLLEPLDLGGGDEDEKEAMEQPEGTRGD
TVSASPCSVPLARANSLEDLVLKEASTVTSPLEPPKTLSQEQWAIPVDVTTPVGDFYCLI
PQPAFQWPFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHSEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPEHVSVILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSQGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRNRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMVDLHRMMTGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEEALAELTKKLGALEEPDLTGQLVDLPDYYTWGEELTETRSLIQQRVLESVNGLKSLS
AGRVVVVKNKEHHNALGVILQVSSNSTSRLFTTLVLCDKPTSEDPQQRGLASPGVPYPDD
LVGFKLFLPEGPCDHTVAKLQPRDVAAITTKVLRVNGEKILEDFSRRQQLKFKKDPPVAA
VTAAVQELLRLSQAHPAGPPTLDPVNDLQLKDMLVVEGGLRARKLEELIREAQCVHSPRF
PAQYLKLRERMQVQKEMERLHFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDIGEQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVGVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagagggagagactagtgctaccttcctcagatcccctggacctgcctcttcgg
gctgtggagctgggttgcagtgggcgctgggagctagtgaatgttcctggggctccggag
agcacccttccccacagcctccttccctgtgccctagatctgcagcaagaagcggagcaa
ttgtttctgtcatctccagcctggctgcctctgcatgacctggagcactcagcccgaaaa
tgtcaaaggaagatggatccctgggctctccttgctctggtgggggccccagtcccctct
gacctacaggctcaaagacacccaaccacaggccacatactgggctacaaggaggtcctg
ctggagaatacagacctgtcagccactacctccttatctcttcgccggcccccagggccc
atctcccagcccctgtgggggaatccaacacaatatcctttctggccaggtggaatggat
gagcccaccataacagatctgagcactcaggtggaagctgaggaggagatagactttgag
agagatcttcttactattccacctggcttcaagaaaggtgtggactttgcaccaaaggat
cacccagctccagctcctgggttgctcagcctcagccacctgctagagcccctggatctg
ggtgggggtgatgaagatgagaaggaggcaatggaacagccagaaggtaccagaggggac
actgtttcggcctctccctgtagtgttcccttggcccgagcaaacagcttggaggaccta
gtgctgaaggaagcgtccacagttacatcccccctagagccccccaaaactctttctcag
gagcagtgggccattcctgtggatgtcaccacccccgttggtgatttctactgcctcatt
ccccagccagccttccagtggccatttgagcctgatgtatttcagaaacaggccatcctg
cacttggaacggcacgactcagtttttgtggcggctcacacatccgcagggaagacagtt
gtggctgaatatgccattgcccttgcccagaagcacatgacgcgcaccatctacacttcg
cctatcaaggccctgagtaaccagaagttccgagacttccgaaacacttttggggacgtg
gggctgctcactggggatgtacagctgcactcagaggcctcctgcctcatcatgacaaca
gagatccttcgctccatgctgtacagtggctcagatgtcatccgggacctggagtgggtc
atctttgatgaggttcactatatcaacgatgctgagcgtggggtcgtgtgggaggaggtg
ctcatcatgctccctgaacatgtctctgtcatccttctgagtgccactgttcccaacgcc
cttgaatttgctgactggataggacgactgaagcgtcgccagatctacgtgatcagcact
gttgcccgccccgtccccctggagcattatctctttacggggaacagtcccaagactcag
ggtgaactcttcctgttgctggactcccaaggtgccttccacacaaaggggtactatgca
gctgtggaggccaagaaggagaggatgagcaaacatgcccagacctttggggccaagcag
cccacacatcagggggggccggcacaggaccgaggtgtgtacctgtccctcctggcctcc
ctccgcaaccgtgcgcagctgcctgtggtggtgtttaccttctcccggggccgatgtgat
gagcaggcttcaggcctcacctcccttgacctcaccacaagttcagagaagagcgagatt
cacctttttctgcagcgctgccttgctcgtctccgtggctctgatcgccagctgccccag
gtcctgcacatgtcagagctcctgcaccgaggcctgggcgtgcaccacagtggcatcctg
cccatcctcaaagagatcgtggagatgcttttcagccgtggcctggtcaaggtcttgttt
gccactgagacctttgccatgggtgttaatatgccagcccgaaccgtggtgtttgactcc
atgcgcaagcatgacggctctaccttccgggacctgctccctggggagtacgtgcagatg
gcgggtagggcgggccggaggggcctggaccccacaggcactgttatcttgctctgcaag
ggccgagtgcccgagatggtggacctgcaccgaatgatgacgggcaagccatcacagttg
cagtctcagttccgcctcacatacaccatgatcctcaacctgctgcgggtggatgccctc
agggtggaagacatgatgaagaggagtttctctgagtttccatcccgcaaggacagcaag
gcccatgaagaggctctagctgaattaaccaagaagctgggggccttggaggaacctgac
ctgactggccaactggtcgacctacccgactattacacctggggagaggaattgacagag
acccggagcctgatccagcaacgtgtcttagagtctgtgaatgggctgaaatctctctca
gcgggaagggtggtggttgtgaagaataaggagcatcacaatgcactgggtgtgatcctg
caggtctcctcaaactctaccagcagattattcacaaccctggtcttgtgtgataaaccc
acgtctgaggacccacagcagagggggttggcctccccaggtgtgccctacccagacgac
cttgtgggattcaagctgttcctgcctgaagggccctgtgaccacactgtggccaagctt
cagcccagagatgtggccgccatcaccaccaaagtgctccgggtgaatggggagaagatc
ttggaggacttcagcaggaggcagcaactgaaatttaagaaggatcctcctgttgctgcc
gtgaccgctgctgtccaggagctgctgcgcctgtctcaggcccacccagcaggaccccct
acccttgaccctgtcaacgacttgcagcttaaggatatgttggtggttgagggtgggctc
cgtgcccggaagctggaggaactgatccgggaggctcagtgtgtgcacagcccccgtttt
cctgcgcagtacctgaagctgcgggagcgaatgcaggtacagaaggagatggagcgactg
cacttcctactgtcagaccagtcgctgctgctgctccctgagtaccaccaacgagtagag
gtgctccgaaccctgggttatgtagatgaggcaggcacggtgaagctggcagggcgggtg
gcttgtgccatgagcagccatgagctgctcctcactgagctcatgtttgacaacgcgctg
agtgccctgcggccagaggagattgcagccctgctctctggcctggtctgccagagccct
ggggacattggagagcagcttccaagtaccctcaaacagggagtggaacgtgtccgggct
gtggccaagcggattggtgaggtccaggtggcctgtggcctgaaccagacagtggaggaa
tttgtaggggagctgaactttgggcttgttggagttgtgtatgagtgggcccggggcatg
cccttctccgagttggcagggctctcagggacccctgagggcctggtggtccgctgtatc
cagcgcctggccgagatgtgtcggtcgttgcggggggcagcccgcctggtaggtgagcct
gtgttaggcgccaagatggagacagcagctaccctgctacggagggacattgtcttcgca
gctagcctctatactcagtga
DBGET
integrated database retrieval system
