Pteronotus mesoamericanus (Parnell's mustached bat): 129072794
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Entry
129072794 CDS
T09558
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ppam
Pteronotus mesoamericanus (Parnell's mustached bat)
Pathway
ppam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129072794 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppam03021
]
129072794 (PCF11)
03019 Messenger RNA biogenesis [BR:
ppam03019
]
129072794 (PCF11)
Transcription machinery [BR:
ppam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129072794 (PCF11)
Messenger RNA biogenesis [BR:
ppam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
129072794 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
129072794
NCBI-ProteinID:
XP_054432323
LinkDB
All DBs
Position
Unknown
AA seq
1684 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVPQIPPMAVKTPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNPLNQSDIKISKTIPSEKLNSSKQEKSKSGEKTKKELDQL
DSKSKSKSKSPSPLKNKLSHTKDLKNQESECPRVSDMSKRDPRLKKHLQDKTDSKDDDTK
EKRKTTEKKDKDEHMKSSEHRLVGSRNKIVNGIVQKQDTITDESEKQGTKPGRSSTRKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKPGKIRQSGCKQSHMEEFMPPSRE
ERNAKRSTKQDVRDPRRMKKTEEDRPQEAANQHSAKSGTEPKENVENWQSSKSTKRWKSG
WEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLASK
RELLQKTSERLASGEITQDEFLLVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKPL
LSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRN
SGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFNDR
FPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPAKMIF
EGPNKLSPRIDGPPAPGSLRFDGSPGQIGGGGPLRFEGPQSQLGGGCPLRFEGPPGPVGT
PLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLR
FEGPHGQPVGGLRFDNPRGQPIGGLRFEGGHGPSGPAIRFDGPHGQPAGGIRFEGPLLQQ
GVGMRFDGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEG
PVPGGGLRIEGPLGQGGPRFDGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGP
QRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGGRFDNHPSQRLESVSFNQT
GPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDE
KNLQSSQFGNFGNLPAPITVGNIQGSQQVLTGVAQPVPFGQGQQFLPVHPQNLGAFVQNP
SGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPSTEEEEDQNE
DQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCT
PSPSKTPVENPLNIMLNIVKNELQEPSESPKVKEEQIDIPPACTEESIATPTEIKTENDT
VESV
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggacgagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaagttacgttcc
acatgggatgaaatattcccattgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagccttcaacacctggcacagtggtc
agttcccctagcatctctactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttattagaacttcagcag
aaaaagctggagcttgaattagagcaagctaaagcacaattggccgtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgttccacaa
attcccccaatggcagtcaaaactccccatcaggttcctgtgcaacctgagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaacaaaccgggatccccgtcttaat
aggatgagtcaacattcttctcatggaaaagatcaaagtcacagaaaagaattcctaatg
aacccattaaaccaatctgacattaagataagtaaaactataccctctgaaaaactaaat
tcatccaaacaagaaaaaagtaaatcaggtgaaaaaacgaagaaagaacttgatcaatta
gattctaaatctaaatctaaatctaaatcaccatcacctttaaaaaacaaattatcccac
acaaaagacttgaaaaatcaagaatctgaatgcccaagggtatctgatatgagcaagaga
gatccaagattaaaaaaacatcttcaagataagactgatagcaaagatgatgatacaaaa
gagaagagaaaaaccacagaaaaaaaagataaagatgagcatatgaaatcatctgaacac
agactggttggaagtagaaataaaattgttaatggcattgtacaaaaacaggatacaata
acagacgagtcagaaaaacagggaacaaaaccagggagatcaagtactagaaagcgatca
agatctcgatcacccaaatctcggtcaccgattatacattctcctaagagaagagatagg
cggtcacccaaacgaaggcaaaggagtatgtctccaacctcaacacccaaacctggaaag
attcgccagtcaggatgtaagcagtcccatatggaagaatttatgccgccttctagggaa
gaaagaaatgctaagagaagtactaaacaggatgttcgagatccaaggcgaatgaaaaag
actgaagaggaccgaccacaagaagctgcaaatcagcattctgcaaaatcaggcactgaa
ccaaaagagaatgtagaaaattggcaaagttccaagtctaccaaaagatggaaatctggt
tgggaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcacctaaga
catagggaaagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcagcag
catcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagcaaa
agagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggatgag
ttccttcttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacataga
tgcaatgtacgcgatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctc
ttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggtt
cagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttgact
gatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaat
agtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcct
atatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaagacat
gacgagcaagtctctgctaaaggtgtacgagaggagcagagatcaccattcaatgatcgt
tttccacttaagcggcctagatatgaagattcagataaaccatttgtagatagcccagct
tcacggtttgccggccttgatacaaatcagcgacttacagctttagctgaagacagacca
ttatttgatggacctagtaggccatcagtaaccagagatggcccagccaagatgattttt
gaaggacctaataaattaagccctagaattgatggacctcctgcaccaggttctcttcgg
tttgatgggtctcctggacagattgggggaggtggccctttgagatttgaaggaccacaa
agtcagctaggaggcgggtgtcctttgagatttgaaggtcctccaggaccagttgggaca
cctttgcggtttgaggggccaattggtcaggcaggtggaggtggttttcggtttgaaggt
tcccctggtctgaggtttgagggatctgcaggtggtctacgatttgaaggaccagggggg
cagcctgtgggtggtctcaggtttgagggacaccggggtcaacctgtgggtggtctcagg
tttgagggacctcatggtcagcctgtgggtggactcagatttgataatccccgaggtcag
cctataggtggacttagatttgaggggggtcatggtccatcagggcccgcaattaggttt
gatggacctcatggtcagccagcaggtgggatcagatttgaaggccctttgctacagcag
ggagttggaatgaggtttgatggccctcatggtcagtcagtagctggtctgaggtttgaa
ggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcaaccaggg
gttgggatcaggtttgaaggacctttagtccaacaaggaggtggaatgaggtttgagggt
cctgtgccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtccaagattt
gatggttgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttaccaaga
tttgatggactacatggtcagccgggtcctagatttgaaaggactggtcagccaggccca
cagagatttgatggaccacctggacagcaggttcaaccaagatttgatggtgtacctcaa
agatttgatggtccacaacaccagcaagcatcaaggtttgatattccccttggtcttcaa
ggtggacgatttgacaatcatccttcacaaaggcttgaatcagtttctttcaatcagact
ggtccatataatgatccacctggcaatgcttttaatgccccatcccaaggactgcagttc
caaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggaccacatggc
cctggaaaccagagtttctcaaatccccttaacagagcttctggacactattttgatgaa
aaaaatcttcagagttctcaatttggaaattttggcaatttacctgctccaataactgta
ggaaatattcagggatctcaacaggttcttactggtgttgctcagccagtaccatttggc
caaggacaacaatttttaccggttcatccacaaaatcttggagcatttgttcagaatcct
tccggagcccttcctaaggcatatcctgataatcatctcagtcaggtggatgtaaatgaa
ttattttcaaaactgctaaaaacaggaattctcaaattgtctcagcctgattcagctaca
acacaagtaaatgaagttgctgctcagccttccactgaagaggaggaagatcaaaatgaa
gatcaagatgttccagatcttaccaattttacaattgaagaattgaaacaacgttatgat
agtgttataaatcgactgtacactggtattcagtgttactcttgtggaatgagatttaca
acatcacagacagatgtatacgcagatcacttggactggcattatcggcaaaacagaact
gaaaaagatgttagcagaaaagtcactcatagacgttggtactacagcttaacagactgg
atagaatttgaggaaatagctgatctggaagaacgtgcaaagagccagttttttgaaaag
gtgcatgaagaagttgtgctcaaaacacaggaagctgctaaagaaaaggagttccaaagt
gtacctgcagggccagctggagcagttgagagttgtgaaatctgtcaagaacaatttgaa
caatactgggatgaagaggaggaggaatggcatttaaaaaatgctattagagtagatgga
aagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgtaca
ccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtgaaa
aatgaattgcaggaaccctctgaaagtcccaaagttaaggaagaacaaattgatattcca
ccagcttgtacagaggaaagcatagcaacacccaccgaaattaaaacagaaaatgataca
gttgagtcagtttaa
DBGET
integrated database retrieval system
