Pteronotus mesoamericanus (Parnell's mustached bat): 129074981
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Entry
129074981 CDS
T09558
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ppam
Pteronotus mesoamericanus (Parnell's mustached bat)
Pathway
ppam03013
Nucleocytoplasmic transport
ppam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129074981 (UPF1)
03015 mRNA surveillance pathway
129074981 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppam03019
]
129074981 (UPF1)
Enzymes [BR:
ppam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129074981 (UPF1)
5.6.2.5 RNA 5'-3' helicase
129074981 (UPF1)
Messenger RNA biogenesis [BR:
ppam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129074981 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
129074981 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
129074981
NCBI-ProteinID:
XP_054434878
LinkDB
All DBs
Position
Unknown
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGPGVPV
GAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcttacgggcccagctcgcagacgctcaccttcctggacactgaggaa
gccgagcttctcggcgccgacacgcagggctccgagtttgagttcaccgacttcactcta
cccagccagacccagacgcctcccggaggccccggaggtggcggcccgggggtcccggtc
ggcgcgggtgcgggagctgcggccggacagcttgacgcccaggttggaggacccgagggc
atcctgcagaatggggccgtggatgacagcgtggccaagaccagccagttgctagccgag
ttgaacttcgaagaggatgaagaggatacctattacacaaaggacctaccagtacatgcc
tgcagttactgcggaatacatgatcccgcttgcgtggtttactgtaataccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggccccttggggagacggtcctggag
tgctacaactgtggctgccgcaacgtcttcctcctcggcttcatccctgccaaggccgac
tcggtggtggtgctgttgtgcaggcagccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcgcagtggcagcccctgatccaggatcgctgcttcctgtcctggctg
gtcaagatcccttcagagcaggagcagcttcgtgcccggcagattactgcccagcagatc
aacaagcttgaggagctgtggaaggagaacccttctgccactttggaggacctggagaag
ccgggtgtggacgaggagccgcagcacgtcctcctgcggtacgaggatgcctaccagtac
cagaacatattcgggcctctggtcaagctggaggctgactatgacaagaagctgaaagag
tcacagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttacccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcagggggatgagatatgtctgcggtacaaaggggatctggca
cccctgtggaaagggatcggccatgtcatcaaggtccctgataattatggcgacgagatc
gccattgagctgcggagcagcgtgggtgcacctgtggaggtgacacacaacttccaggtg
gattttgtgtggaagtccacctcatttgacaggatgcagagtgcgctgaagacctttgct
gtggatgagacctccgtgtcaggctatatctaccacaaattgcttggccatgaggtggag
gacgtgatcatcaagtgccagctgcccaagcgcttcacagcacagggattgcctgacctc
aaccactctcaggtttacgccgtgaagactgtgctgcagagaccactgagcctgatccag
ggaccaccaggaacagggaagactgtgacctcagccaccattgtctaccacctggcacgg
cagggcaacgggcccgtgctcgtctgtgctccaagtaacatagctgtggatcagctgacc
gagaagatccaccagactggactgaaagtcgttcggctctgtgctaagagccgtgaggcc
atcgactccccggtgtcattcttggccctgcacaaccagatcaggaacatggatagcatg
ccagagctccagaagctgcagcagctcaaggatgagactggggaactgtcatctgctgat
gagaagcggtaccgagccctgaagcgcacagctgaaagggagctgctcatgaacgcagat
gtcatctgctgcacctgcgtgggtgcgggagatcctaggctcgccaagatgcagttccgc
tccattctcatcgatgagagcacccaggccaccgagccagagtgcatggtacccgtggtc
ctcggagccaagcagctgatcctcgtgggcgaccactgccagctgggccctgtggtgatg
tgcaagaaggcggccaaggccggactgtctcagtcgctatttgagcgcctggtcgtgctg
ggcattcgtccaatccgcttgcaagtccagtatcggatgcaccctgcactcagtgccttc
ccatccaacatcttctacgagggctctctgcagaacggtgtcactgcagcggatcgagtg
aagaaggggtttgacttccagtggccccaacctgataagccaatgttcttctatgtgacc
cagggccaggaggagattgccagctcgggtacctcctacctgaacaggacggaggctgca
aatgtggagaagattaccacgaagctgctgaaggcaggcgccaagccagaccagattggc
atcatcacgccttacgagggccagcggtcctacctcgtgcagtacatgcagttcagtggc
tccctgcacaccaagctgtaccaggaggtggagattgccagcgtggatgcattccagggg
cgtgagaaggacttcatcatcctctcctgcgtgcgagccaacgagcaccaaggcatcggg
tttttaaacgaccccaggcggcttaatgtggccctgacccgagcaagatacggggtcatc
attgtgggcaaccccaaggctctgtccaagcagccactgtggaaccacctgctgaattac
tataaggagcagaaggtgctagtggaggggcccctgaacaacctgcgggagagcctcatg
cagttcagcaagccccggaagctggtcaacaccatcaaccctggggcccgcttcatgact
acagctatgtatgatgcccgggaggccatcatcccaggatcagtctatgatcgaagcagc
cagggccggccctccaacatgtacttccagacccacgaccagctcggcatgatcagtgcc
ggccccagccacgtggccgccatgaacattcccatccccttcaacctggtcatgccaccc
atgccaccgccggggtacttcggacaggccaatgggccggccgcaggccggggcacccca
aaaggtaagacgggtcgtggtggacgccagaagaaccgcttcgggcttcctgggcccagc
cagacgaacctgcccagcagccaggccagccaggacgtggcatcgcaacccttctctcag
ggggccctgacgcagggctacatttccatgagccaaccctcccagatgagccagcctggc
ctctcccagcctgagttgtcccaggacagttaccttggtgatgaatttaagtctcagatc
gatgtggcgctgtcgcaagactccacgtaccagggggagcgagcataccagcatggtgga
gtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
