Pteronotus mesoamericanus (Parnell's mustached bat): 129075263
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Entry
129075263 CDS
T09558
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ppam
Pteronotus mesoamericanus (Parnell's mustached bat)
Pathway
ppam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129075263 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppam03019
]
129075263 (EDC4)
Messenger RNA biogenesis [BR:
ppam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129075263 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
129075263 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
WD40_CDC20-Fz
DUF445
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
129075263
NCBI-ProteinID:
XP_054435277
LinkDB
All DBs
Position
Unknown
AA seq
1433 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGPSAESQRPPNTYNGDLNGLLVPDPLCSGDGTS
ANKPGLRAKPSINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHVNSPQLACLDEAGNLFVWHLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEEGSPMVALLHEDRAEVWNLDMLRSNHSTWPVDVSQIKQGFIMVKGHSTYL
SEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHELKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNQELKMWCTVSWTCLQTICFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVTRCRLRHTEVLPA
EEENDSLGAGELLRVGGIRWYVGSAKAHRARALVVSIVLADGTHGAGAMESAAGVLIKLF
CVHTKALQDVQIRFQPQLNPDVVAPLPAHTAHEDFAFGESRPELGSEGLGSATHGSQPDL
RRIVELPAPADFLSLSSETKPKLMTPDAFMTPSTSLQQIAASPSNSSSSSSSSSSSSSSS
SLTAVSAMSSTSAVDPSLPRPPEELTLSPKLQLDGSLTMNSGSSLQASPRSLLPGLLPGP
ADKLTPKGAGQVPTAASAISLELQEVEPLGLRQASPSRTRSPDVISSASTALSQDIPEIA
SEALSRGFGSSAPEDLEPNSMASAASALHLLSPRPRPGPELGSQLSLDGGPGDGDRHSTP
SLLEAALTQEATTPDSQVWPTAPDITRETCSSLTESPRNGLQEKHKSLAFHRPPYHLLQQ
HDSQDASAEQSDHDDEVASLASAAGGFGAKVPTPRLPAKDWKTKGSPRTSPKLKKKGKKD
DGDSAMESRLTEHQVAEPSEDWPALIWQQQRELLELRHSQEELLQRLCAQLEGLQSTVTG
HVERALESRHEQEQRRLERALAEGQQRGGQLQEQLTQQLSQALSSAVAGRLERSIRDEIK
KTVPPCVSRSLEPVAGQLSTSVATKLTAVEGSMKESISKLLKSKNLTDAIARAAADTLQG
PMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQQLESHMKSRKAREQEARE
PVLAQLRGLVSTLQGATEQMAATVSSSVRAEVQHQLHVAVGSLQESILAQVQRIVKGEVS
VALKEQQAAVTSSIMQAMRSAAGTPVPAAHLDCQAQQAHILQLLQQGHLNQAFQQALTAA
DLNLVLYVCETVDPGQVFGQPPCPLSQPVLLSLIQQLASDLGTRTDLKLSYLEDAVMHLD
HSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSLGKAARRLSLMLHGLVTPSLP
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctacgggacatccta
aagctggaccggcccgcgggaggccccagtgcagagagccagcggccacctaacacctac
aatggggacctcaatggactcctggttccagaccctctctgttcaggtgacggtacttcg
gcaaacaagcctggtctccgtgccaagccttccattaacctgcaggagaagcaggtcatc
tgcctctccggagatgacagctctacctgcattgggattttggccaaggaggtagaaatt
gtggccagcagtgactctagcatctcgagcaaggcacgagggagcaacaaggtgaaaatc
caacctgtcgccaagtatgactgggagcagaaatactactatggcaacctgattgctgtg
tccaactccttcttggcctatgccattcgggctgccaacaatggctcagcgatggtgcgg
gtgatcagtgtcagcacttcggagcggaccctgctcaagggcttcacaggcagtgtggct
gacctggccttcgcacacgtcaactccccacagctggcctgcctggatgaggcaggcaac
ctgtttgtgtggcacttggctctggttaatggcaaaattcaagaagagattttggtccat
atccggcagccagagggtacgccactgaaccactttcgtaggatcatctggtgcccattc
attcccgaggagagtgaagactgctgtgaggagggtagcccaatggtggccctgttgcat
gaggacagggccgaggtgtggaacctggacatgctccgctccaaccacagcacctggcct
gtggatgtcagccaaatcaagcagggcttcatcatggtaaaaggccacagcacatacctg
agtgaaggggccctctcacctgatgggactgtcctggctacagcaagccacgatggcttt
gtcaagttctggcagatctacattgagggacaggatgagccaaggtgtctacatgagttg
aagcctcatgatgggcggcctctctcctgcctcctgttctgtgacaaccataagaaacag
gaccctgaggtccctttctggaggttcctcattactggtgctgaccagaatcaggagcta
aagatgtggtgcacggtgtcctggacctgcctgcagaccatttgtttctccccagatatc
ttcagctcagtgagtgtgccccccagcctcaaagtttgcctggacctctcagcagaatac
ctgattctcagcgacgtgcaacggaaggtcctttatgtaatggagctgctgcagaaccag
gaggaaggccgtgcctgcttcagttccatctctgagttcctactcacgcaccccgtactg
agcttcggtatccaggttgtgactcgctgccggctgaggcacactgaggtgctgcctgct
gaggaagagaatgacagcctaggggctggtgagctgctcagggttggaggtatacgttgg
tatgtagggagtgccaaggcacacagggccagggctttagttgtcagcattgtccttgca
gatgggacccacggagccggtgctatggagtctgcagctggtgtgctcatcaagctcttt
tgtgtgcatactaaggcattgcaagatgtgcagatccgcttccagccgcaactgaaccct
gatgtggtcgcccccctccctgcccatactgcccatgaggactttgcatttggagaatct
cggcctgaactgggctctgagggtctgggttcagctactcacggctcccagcctgatctc
cgacgcatcgtggagctacctgcacccgctgacttccttagtctgagcagtgagaccaag
cccaagctgatgacacctgatgctttcatgacacctagcacctccttgcagcagattgct
gcatcccctagtaatagcagcagcagcagcagcagtagcagcagcagcagcagcagctcc
tctcttacagctgtatctgccatgagtagtacctcagcggtggacccctccttgcccagg
ccacctgaggagctgaccttgagccccaagctgcagctggatggcagtctgacaatgaac
agtggcagcagcctgcaggcaagcccgcgcagcctcctgcctggcctgctcccaggtcca
gctgacaaattaactcccaaaggggctgggcaggtacctactgctgcctctgcaatctcc
ctggagctgcaggaagtggagcccctggggctacgccaggcttcccccagccgtacccgc
tcccctgatgttatatcttcagcttccactgccctatcccaggacatccctgagatcgca
tctgaggccctgtcccgtggctttggctcctctgctcctgaggacctcgagccaaacagt
atggcctcagctgcctcagcactacacctgctgtccccgcggccccggccagggcctgag
cttggctcccagcttagcctggatggaggccctggggatggggatcggcatagtacccct
tccctcctggaggccgccttgacgcaggaggccacaacccctgacagtcaggtctggcct
acagcaccagacattactcgggagacctgcagcagcctcacagaaagccccaggaatggc
ctacaggaaaagcacaagagcctggccttccaccgaccaccttatcacttgctgcaacaa
catgacagccaggatgccagtgctgaacaaagtgaccacgatgatgaggtggccagcctt
gcctctgctgccgggggctttggcgccaaagttcccactccacggctgcctgccaaggac
tggaagactaagggatcccctcgaacctcacccaagctcaagaaaaagggcaaaaaagat
gatggggattcagccatggaatcccggctcacggagcaccaggtggcagagccctctgag
gactggccagcactaatttggcaacagcagagagagctgttggagttgcggcacagccaa
gaagagctgctgcagcgtctgtgtgcccaacttgaaggcctgcagagcactgtcacgggc
catgtagaacgtgccctagaatcgcggcatgaacaggagcagcggcggctagagcgggca
ctggctgaaggacagcaacgaggtggtcagctgcaggaacagctgacacaacagctgtcc
caggcactgtcttcagctgtggctgggcggctggagcgcagcatacgggatgagatcaag
aagacagtgcctccatgtgtctctaggagtctagagcctgtggcaggccaactgagcacc
tcagtggccaccaagctcacggctgtggaaggtagcatgaaagagagtatctccaagctg
ctgaagtccaagaatttgacagatgccattgcccgagcagctgcagacacgttacagggg
ccaatgcaggctgcctaccgtgaagccttccagagtgtggtgctgcccgcctttgagaag
agctgccaggccatgttccagcagatcaatgatagcttccgactgggcacacaggaatac
ttgcaacagctagagagccacatgaagagccggaaggcacgagagcaggaggcgcgggag
cctgtgctggcccagctgcggggcctggtcagcacgttgcagggggccactgagcagatg
gcagccactgtgtccagcagcgttcgggctgaggtgcagcaccagctgcatgtggcagtg
ggcagcctgcaggagtccattttagcacaggtacaacgcattgttaagggtgaggtgagt
gtggcacttaaggagcagcaggctgccgtcacctctagcatcatgcaggccatgcgctca
gctgctggcacacctgtccctgctgcccacctggactgccaggcccagcaagcccatatc
ctgcagctgctgcagcagggccacctcaatcaggccttccagcaggccctgacagctgct
gatctgaacctggtgctgtacgtgtgtgaaactgtggacccaggccaggtttttgggcag
ccaccctgcccactctcccagcccgtactcctctccctcatccagcagctggcctctgac
cttggcactcgaactgacctcaagctcagctacctagaagatgctgtgatgcacctggac
cacagtgaccctatcactcgggaccacatgggctccgtcatggcccaggtgcgccagaag
ctcttccagttcctccaggctgaaccacacaactcacttggcaaagcggcccggcgtctc
agcctcatgctgcatggccttgtgacccccagcctcccttag
DBGET
integrated database retrieval system
