KEGG   Pteronotus mesoamericanus (Parnell's mustached bat): 129088228
Entry
129088228         CDS       T09558                                 
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
  KO
K04556  parkin [EC:2.3.2.31]
Organism
ppam  Pteronotus mesoamericanus (Parnell's mustached bat)
Pathway
ppam04120  Ubiquitin mediated proteolysis
ppam04137  Mitophagy - animal
ppam04141  Protein processing in endoplasmic reticulum
ppam05012  Parkinson disease
ppam05014  Amyotrophic lateral sclerosis
ppam05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:ppam00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    129088228 (PRKN)
   04120 Ubiquitin mediated proteolysis
    129088228 (PRKN)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    129088228 (PRKN)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05012 Parkinson disease
    129088228 (PRKN)
   05014 Amyotrophic lateral sclerosis
    129088228 (PRKN)
   05022 Pathways of neurodegeneration - multiple diseases
    129088228 (PRKN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ppam04131]
    129088228 (PRKN)
   04121 Ubiquitin system [BR:ppam04121]
    129088228 (PRKN)
   03029 Mitochondrial biogenesis [BR:ppam03029]
    129088228 (PRKN)
Enzymes [BR:ppam01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.31  RBR-type E3 ubiquitin transferase
     129088228 (PRKN)
Membrane trafficking [BR:ppam04131]
 Autophagy
  Mitophagy
   PINK1-Parkin associated proteins
    129088228 (PRKN)
  Aggrephagy
   Other aggrephagy associated proteins
    129088228 (PRKN)
  Xenophagy
   Other xenophagy associated proteins
    129088228 (PRKN)
Ubiquitin system [BR:ppam04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   RBR proteins
    129088228 (PRKN)
Mitochondrial biogenesis [BR:ppam03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-dependent mechanism factors
    129088228 (PRKN)
SSDB
Motif
Pfam: zf-RING_14 zf-RING_12 ubiquitin IBR_2 IBR_1 Rad60-SLD IBR Dsc3_N Crinkler
Other DBs
NCBI-GeneID: 129088228
NCBI-ProteinID: XP_054451402
LinkDB
Position
Unknown
AA seq 464 aa
MIVFVRFNSSHGFPVEVDPTTSIFQLKEAVAKRQGVAADQLRVIFAGKELGDDLVVQSCD
LDQQSIVHVVLRPRRGGQEVTPPGGAQPRSTAGASQRGPESLTRVDFSGSVLPTDTVGLA
AILDDDRQSDAPPAGRAAGRPAYNSFYVYCKGACHRVQPGKLRVRCGTCQQATLTLAQGP
SCWEDVLIPNRMRGECQSLNCPGTRAEFFFKCGAHPTSDKETSVALNLITTNSRNIPCIT
CTDTRSPVLVFQCNFRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
LHHFRILGEEQYDRYQHYGAEECVLRMGGVLCPRPGCGAGLLPEPWQREVACDAGDGLGC
GLVFCRDCGEAAHEGECSALAASAAATQVYRVDEKAAEEARWEESSKETIKKTTKPCPRC
RVPVEKNGGCMHMKCPQPQCRLDWCWHCGCEWNRTCMGDHWFDV
NT seq 1395 nt   +upstreamnt  +downstreamnt
atgatcgtgtttgtgaggttcaactccagccacggtttcccagtggaggtcgatcccacc
accagcatcttccagctcaaggaggcggttgctaagcgacagggggttgccgctgaccag
ctgcgggtgattttcgcggggaaggagctcggcgatgacttggtggtgcagagctgcgac
ctggaccagcagagcattgtccacgtggtgctgagacccaggagaggaggccaggaagtg
accccccctggcggggcgcaaccccggagcaccgcgggggcctctcagagggggcccgag
agcttgactcgcgtggacttcagcggctctgtcctcccgaccgacacggtgggtctggct
gccattctggatgacgaccggcagagcgatgcgccgcccgccggacgcgcagcagggaga
ccggcctacaacagcttctacgtttactgcaaaggcgcctgtcaccgagtgcagccggga
aagctcagggtgcggtgcggcacctgccagcaagccacgctcaccttggcccagggcccg
tcctgctgggaagacgtcctaatcccaaaccggatgaggggcgagtgccagtctctgaac
tgccctgggacaagagcggaatttttctttaaatgcggagcacacccgacctctgataaa
gaaacatcagtggctttgaacctgatcacaacgaacagccgaaatatcccctgcataacg
tgcacagacaccaggagcccggtcctggttttccagtgcaacttccgccacgtgatctgc
ttggactgcttccacctctactgcgtgaccaggctgaacgaccggcagttcgtccacgac
ccccagctgggctactctctgccgtgtgtggccggctgccccaactccttgattaaagag
ctccatcacttcaggattctcggagaagagcagtacgaccggtaccagcactacggcgct
gaggagtgcgtgctgcggatggggggcgtgctgtgcccccggccgggctgcggggccggg
ctgctgccggagccgtggcagagggaggtcgcctgcgacgcgggcgacggcctgggctgc
gggctcgtcttctgccgggactgcggggaagcggcgcacgaaggcgaatgcagcgcgctg
gccgcctcagcagcagcgactcaggtctacagagtggacgagaaggcggccgaggaggcc
cggtgggaggagtcctccaaagagacgatcaagaaaaccaccaagccctgcccccgctgc
cgggtgccggtcgagaagaacggaggatgcatgcacatgaagtgcccacagccccagtgc
cggctggactggtgctggcactgtggctgcgagtggaaccgcacctgcatgggcgaccac
tggttcgacgtgtag

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