Paracoccus pantotrophus: ESD82_00630
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Entry
ESD82_00630 CDS
T06495
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppan
Paracoccus pantotrophus
Pathway
ppan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ESD82_00630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppan03019
]
ESD82_00630
03009 Ribosome biogenesis [BR:
ppan03009
]
ESD82_00630
Enzymes [BR:
ppan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ESD82_00630
Messenger RNA biogenesis [BR:
ppan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ESD82_00630
Ribosome biogenesis [BR:
ppan03009
]
Prokaryotic type
rRNA processing factors
ESD82_00630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QFG34774
UniProt:
A0AAE6NR48
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All DBs
Position
2:128718..131396
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AA seq
892 aa
AA seq
DB search
MSKKMLIDATHSEETRVVVVDGTKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPAADRKALIEEERQAAAAEADEGEKKRSPRRRKPAKAAA
ADSGDAVAVSDEIAGMAVLDHSEGEAAGAADLAVDVAEAVPPATAEDVAAPVPEAADEAA
GDDAAEDDGIESVAEEDVAEEISPPRKPRARRYKIQEVIKVRQIMLVQVVKEERGNKGAA
LTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIASELEVPEGAGLIIRTAGSQ
RTRTEIRRDYEYLMRLWEQIRELTFKSIAPAPIYEEGDLIKRTIRDLYSKEIDEVLVEGE
RGYRTAKDFMKMIMPSHAKNVKHYTDQMPLFARYQVESYLGGMFNPVVQLKSGGYIVIGV
TEALVAIDVNSGRATKEGSIEETALKTNLEAAEEIARQLRLRDLAGLIVIDFIDMEERKN
NAAVEKRFKERLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCPHCHGTGLIRS
DDSLALTILRAIEEEGTRKRSREVLVKAPVAVANFLMNAKREHIATIEARYGLSVRVEAD
PALISPDYAIEKFKTATRNVPEVVSPVVSVDARLMAQIDDEEPAEEEVDEVAGEEDRAED
GHAETGEGSEGAENGSKRRRRRRRRRGGKNGDGEASHAEEGSDHAEDGAEDAVSEAEPAE
RPAEGEVTPAEVVPEVVAGSENAAEPDAESAEKPRRRTRTRRRKPEEPAETAVEEPEAGV
EAEPALQTVEPAAEAASADAAPAPQDAQAGEPVAEPAVGEAADAEAVEPAATDAEEAEAA
EPETVGAEAEAAVAPEAVPAPVPEPAPEPAPAPAAANEEPARPKRRGWWSMG
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaaatgctgatcgacgccacgcattccgaggagactcgggttgtcgtggtc
gatggaaccaaagtcgaggaatttgatttcgagacggtcaacaagcggcagcttgctggc
aacatctatctggccaaggtgacgcgggtcgaaccctcgctgcaggccgccttcgtggat
tacggcggcaatcgccacggtttcctggcctttgccgagatccatcccgattactaccag
attcccgccgccgaccgtaaggcgctgatcgaggaagaacgccaggccgccgccgccgag
gccgacgagggcgagaaaaagcgcagcccgcgtcgccgcaagccggccaaggccgctgca
gccgacagtggcgacgccgtcgcggtttcggacgagatcgccgggatggccgttctggac
cactcggaaggcgaggccgcgggagccgcggaccttgcggtggatgtggccgaggccgtg
ccgccggcgacggcggaggatgtcgccgcccccgtccctgaggcggccgatgaggccgca
ggcgatgacgccgccgaggacgacggtatcgaatccgtcgccgaggaggacgtggccgag
gaaatctcgccgcctcggaaaccccgcgcccgccgctacaagatccaggaggtgatcaag
gtccggcagatcatgctggtccaggtcgtcaaggaggagcgcggcaacaagggcgccgcg
ctgaccacctatctgagcctcgccggccgctattgcgtgctgatgccgaacaccgcgcgc
ggcggcgggatttcccgcaagatcaccaatgccgccgaccgcaagaagctgaaggagatc
gccagcgagctggaggtgcccgagggcgccgggctgatcatccgcaccgccggcagccag
cggacgcggacggaaatccgccgtgactacgaatacctgatgcggctgtgggagcagatc
cgcgagttgaccttcaagtccatcgcccccgcgccgatctacgaggaaggcgacctgatc
aagcgcacgatccgcgatctctacagcaaggagatcgacgaggttctggtcgagggcgag
cgcggctatcgcacggccaaggacttcatgaagatgatcatgccgtcccatgccaagaac
gtgaagcattacaccgaccagatgccgctgttcgcgcgctaccaggtggaaagctacctg
ggcggcatgttcaacccggtcgtgcagctgaaatccggcggctatatcgtcatcggcgtg
accgaggcgctggtcgccatcgacgtcaactcgggccgggccaccaaggaaggctcgatc
gaggaaaccgcgctgaagacgaacctggaagccgccgaggagatcgcgcgccagctgcgg
ctgcgcgaccttgcgggcctgatcgtcatcgacttcatcgacatggaagagcgcaagaac
aacgccgccgtcgagaaacgcttcaaggagcggctcaagaccgaccgggcgcgcatccag
gtcgggcgcatctcgggcttcggcctgatggagatgtcgcgccagcgcctgcggccgggc
atgctggaatcgaccacgcagccctgcccgcattgccacggtaccgggctgatccgttcg
gacgacagcctggcgctgaccatcctgcgcgccatcgaggaagagggcacccgcaagcgt
tcgcgcgaggtgctggtcaaggcgccggtcgcggtcgccaacttcctgatgaacgccaag
cgcgagcatatcgccacgatcgaggcgcgctatggtctctcggtcagggtcgaggccgat
ccggcgctgatctcgcccgattacgccatcgagaagttcaagaccgcgacgcgcaacgtg
cccgaggtggtttcgcccgtggtttcggtcgatgcccggctgatggcgcagatcgatgac
gaggaacccgccgaggaagaggtcgatgaggtcgccggggaggaagaccgcgccgaggac
ggccatgccgagaccggcgagggcagcgaaggcgccgagaacggcagcaagcgccgtcgt
cgccgccgccgccgtcgcggcggcaagaacggcgacggcgaggcgtcccatgccgaggag
ggctccgaccacgccgaggacggcgccgaggatgcggtttcggaagccgagccggccgag
cggcctgccgaaggcgaggtgacgccggcggaggtcgtgcccgaggtcgtggccgggtcc
gagaatgcggccgaaccggatgccgaatcggccgagaagccgcgccgccgcacccggacg
cgccgccgcaagccggaagaaccggccgaaaccgccgtggaggagccggaggcgggtgtc
gaagccgagccggcgctccagaccgtcgagcctgccgcggaggccgcatcggcggacgcc
gcgccggcaccgcaggatgcgcaggccggggagccggttgccgagcctgccgtcggcgag
gcggccgacgccgaggctgttgaacccgccgcgaccgacgccgaggaagccgaggccgcg
gaacccgaaaccgtcggggcagaggccgaagcggccgttgcacccgaagccgtgccggcg
cccgtccccgagcccgcccccgagcccgctcccgccccggccgcggcgaacgaggagccg
gcgcgtcccaagcgccgcggctggtggtccatgggctga
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