Paracoccus pantotrophus: ESD82_17040
Help
Entry
ESD82_17040 CDS
T06495
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppan
Paracoccus pantotrophus
Pathway
ppan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ESD82_17040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppan03400
]
ESD82_17040 (mfd)
Enzymes [BR:
ppan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ESD82_17040 (mfd)
DNA repair and recombination proteins [BR:
ppan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ESD82_17040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
MFD_D3
AAA_30
Cas3-like_C_2
AAA_16
RecG_dom3_C
UB2H
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QFG37795
UniProt:
A0AAE6NWT8
LinkDB
All DBs
Position
1:complement(1315736..1319200)
Genome browser
AA seq
1154 aa
AA seq
DB search
MAPLPEHLTLSGAPEGMDAALVARELARGNPVIHIARDDRRMAAMRAALAFFAPAAAVLE
FPAWDTTPYDRVSPAAGVMAARMAVLTALAHGALKGPFVVLTTLSAAMQRVPAREVLRDA
GFSAAVGDRMDEAALRAFLARMGFSQAPTVTEPGDFAIRGGIIDIFPPGESGPIRLDMFG
DVLEGARRFDAETQRSVEKLDRIELAPMSEVILDEAAITRFRQNYRVEYGAAANDPLYEG
ISAGRKMAGMEHWLPWFHERLESLFDYLPGASVVADDHLDQVRDARWHTITEQFDARREA
LARKGGSDTVYRPVPPAGMFPDEAEWARWLAAHRLLRLSVLPQPPGPGVLDAGGRVGRNF
APERQAEKGNLFNALADHIRNLQASRRVVIASFSEGARERLAGLIADEGIKGAKPIADLR
DLPDQPGALGLAVWPLEEGFTSDGSATGALAVISEQDVLGDRLIRGAKKRRKAENFLRDT
TTLTPGDLVVHVEHGIGRYTGLETVKALGVPHDCVALEYAGGDRLYLPVENIELLSRYGH
EEGLLDKLGGGAWQARKARLKERIKLIADKLMRVAAERMLRPAPVLEPEHHEIESFAARF
PYAETEDQASAIADVAEDLAAGRPMDRLVVGDVGFGKTEVAMRAAFIAASQGRQVAVVAP
TTLLARQHFRTFAERFRGTAIDVRPLSRFVSARDAAETRKGLAEGTVDIVVGTHAVLAKQ
VRFKNLGLLIVDEEQHFGVAHKERLKELRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG
TPPVDRLSIRTYVSEFDSVTIREALLREKYRGGQSFFVVPRLSDLPEIEAWLREHVPEVS
TIVAHGQLAAGDLDQRMNAFYDRGADVLLATSIVESGLDIPTANTMVVWRADMFGLAQLY
QIRGRVGRSKTRAYCYLTTKPRVPLTPQAMRRLKFLGAIDSLGAGFNLASQDLDLRGAGN
LLGEEQSGHIKEVGFELYQQMLEETIAKLKSGEIEGTPEDEWAPQLNLGVPVTIPESYVP
DLDVRLGLYRRLAELTTKVELEGFAAELIDRFGPLPREVNTLLLVIRIKAMAKRANISKL
DAGPKGATIQFHGDKFPNPAGLVEFIHDQRGQAKVSDNRIIVLRDWPTDADRIKGSFAIA
KELAAKIREGRAKG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgcttcccgaacacctgaccctgtccggcgcgcccgagggcatggacgccgcg
ctggtcgcgcgcgaactggcccgcggcaatcccgtcatccatatcgcccgcgacgaccgg
cgcatggccgcgatgcgggcggcgctggcgttctttgcgcctgcggccgcggtgctggaa
ttcccggcctgggacaccacgccctatgaccgcgtctcgcccgccgccggggtgatggcg
gcgcgcatggcggtgctgacggcgctggcgcatggcgcgctgaaagggcccttcgtggtg
ctgaccacgctgtcggccgccatgcagcgcgtgcccgcgcgcgaggtgctgcgcgatgcc
ggcttctcggccgcggtgggcgaccgcatggacgaggccgccttgcgcgccttcctggcc
cgcatgggattctcgcaggccccgaccgtgaccgagcccggcgatttcgcgatccgcggc
ggcatcatcgacatcttcccgcccggtgaatcggggccgatccggctggatatgttcggc
gacgtgctggagggcgcgcgcagattcgatgcagaaacacagcgttccgtcgaaaagctt
gaccgtatcgagcttgcgcccatgtccgaggtgatcctggacgaggctgccatcacccgc
tttcgccagaactaccgcgtggaatatggcgccgccgccaacgatccgctttacgaaggc
atcagcgccggccgcaagatggcgggcatggagcattggctgccctggttccacgagcgg
ctggaaagcctgttcgattacctgcccggcgcctcggtggttgcggacgatcacctggac
caggtgcgcgatgcgcgctggcacacgatcaccgaacagttcgacgcccggcgcgaggcg
ctggcccgcaagggcggcagtgacaccgtctatcgccccgtgccccccgccgggatgttc
cccgacgaggccgaatgggcgcgctggctggccgcgcatcggctgctgcgcctgtcggtg
ctgccgcaacctcctggtccgggcgtgctggatgccggcggccgggtcggtcgcaatttt
gcgcccgagcggcaggccgagaagggaaatcttttcaatgcactcgcggatcatattcga
aatcttcaagcttcgcgccgggtggtgatcgccagtttctcggaaggcgcgcgcgagcgg
cttgccgggctgatcgccgacgagggcatcaagggcgccaagcccatcgccgatctgcgt
gacctgcccgaccagcccggcgcgctggggctggcggtctggccgctggaggagggcttc
acctcggacggctcggccaccggggccctggcggtgatctcggaacaggacgtgctgggc
gaccggctgatccggggggcgaagaagcgccgcaaggccgagaatttcctgcgcgacacc
accacgctgacccccggcgacctagtcgtgcatgtcgagcacggcatcggccgctatact
ggcctcgaaaccgtcaaggcgcttggcgtgccgcatgattgcgtggcgctggaatatgcc
ggcggcgaccggctttacctgccggtggaaaacatcgaactgctcagccgctatgggcat
gaggagggtttgctggacaagctgggcggcggcgcctggcaggcccggaaagcgcggctc
aaggaacgcatcaagctgatcgccgacaagctgatgcgcgtcgcagccgagcgcatgctg
cgccccgccccggtgctggagcccgagcatcacgagatcgaaagcttcgccgcccgcttt
ccctatgccgagaccgaggaccaggccagcgccattgccgacgtggccgaggatctggcc
gccggccgcccgatggaccggctggtggtgggcgacgtgggcttcggcaagaccgaggtc
gccatgcgcgccgccttcatcgccgcgagccagggccggcaggtggcggtggtggcgccg
acgacgctgctggcgcgccagcatttccgcaccttcgccgaacgcttccgcggcacggcg
atcgatgtccggccgctgtcgcgcttcgtttccgcgcgtgacgcggccgagacccgcaag
ggcctggccgagggcacggtggacatcgtcgtcggcacccatgcggtgctggccaagcag
gtgcgcttcaagaatctgggcctgttgatcgtggacgaggagcagcatttcggcgtcgcc
cacaaggagcggctgaaggagctgcgcagcgacatccacgtcctgaccctgaccgcgacg
ccgatcccgcgcaccttgcagctgtcgctgaccggggtgcgggacctgtcgatcatcggc
acgccgccggtggaccggctgtcgatccgcacctatgtatcggagttcgacagcgtgacc
atccgcgaggcgctgctgcgcgagaaatatcgcggcgggcagagcttcttcgtcgtgccg
cgcctctcggacctgcccgaaatcgaggcatggctgcgcgagcacgtgcccgaggtcagc
accatcgtcgctcatgggcagttggcggcgggcgacctggaccagcggatgaacgccttt
tacgaccgcggcgctgatgtgctgctggcgaccagcatcgtcgaatcgggcctggatatc
ccgaccgcgaacaccatggtggtctggcgcgccgacatgttcggcctggcgcagctatac
cagatccgcggccgggtcgggcgctccaagacccgcgcctattgctacctgaccaccaag
ccgcgggtgccgctgaccccgcaggcgatgcggcggctgaagttcctgggcgccatcgac
agcctgggcgccggcttcaacctggcctcgcaggatctggacctgcgcggcgccgggaac
ctgctgggcgaggaacagtccggccatatcaaggaagtcggcttcgaactttaccagcag
atgctggaggagaccatcgccaagctgaaatccggcgagatcgagggcacgcccgaggat
gaatgggcgccgcagctgaacctgggcgtgccggtgacgatcccggaaagctatgtgccc
gacctggacgtgcggctggggctttaccggcggctggccgagctgacgaccaaggtggaa
ctggagggctttgccgccgagctgatcgaccgtttcgggcccttgccgcgcgaggtgaac
acgcttttgctggtcatccgcatcaaggccatggccaagcgggcgaatatttccaagctg
gatgcgggccccaagggcgcgaccatccagttccacggcgacaagttcccgaacccggcc
gggctggtcgagttcatccacgaccagcgcggccaggccaaggtcagcgacaaccgcatt
atcgtcctgcgcgactggccgaccgatgccgaccgcatcaagggcagtttcgccatcgcc
aaggaactggcggcgaagatcagggaaggcagggccaagggatag
DBGET
integrated database retrieval system
