Pseudomonas phytophila: K3169_01020
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Entry
K3169_01020 CDS
T09747
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
ppao
Pseudomonas phytophila
Pathway
ppao02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
ppao00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
K3169_01020 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
ppao02044
]
K3169_01020 (tssC)
Secretion system [BR:
ppao02044
]
Type VI secretion system
Imp/Vas secretion system core components
K3169_01020 (tssC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
MSP1b
BMFP
RRF
Motif
Other DBs
NCBI-ProteinID:
UXZ96534
LinkDB
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Position
221305..222798
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AA seq
497 aa
AA seq
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MTDLMRDNQAPQGSTQETSEFASLLMQEFKPKTERAREAVETAVRTLAEHALAQTDLISN
DAIKSIESIIAAIDAKLTAQVNQVIHHPEFQQVESAWRGLHYLVNNTESDEQLKIRVLNI
SKPELHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGE
LSKVCAAMHSPFIAAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDARYIG
LTMPRFLARLPYGAKTDPVEAFAFEEDTDGADSANYTWANAAYAMAVNINRSFKHYGWCS
RIRGIESGGEVQNLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDF
AAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRFAHYLKCIVRDKVGSFKEKDEM
QRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVVVEDVEGNPGYYTSKFFLRPHYQLEG
LTVSLRLVSKLPSAKSA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatttgatgcgtgacaatcaggcgccacagggctccactcaggaaaccagcgag
tttgcttcgctgctgatgcaagaattcaaacccaagaccgagcgtgctcgcgaagcggtt
gaaaccgccgtgcggaccttggccgaacacgctttggcacagactgacctcatctccaac
gacgcgatcaaatcgatcgagtcgatcattgcggccatcgacgcaaagctcaccgcgcag
gtgaatcaggtcatccaccacccggaattccagcaagtggaaagcgcctggcgtggtttg
cattacctggtcaacaacaccgaaagcgatgagcaactgaagattcgcgtgctcaacatc
tccaagccggaattgcacaagaccttgaagaaattcaaaggtacggcctgggaccagagc
ccgatcttcaagaaaatgtacgaagaagaatacggccagttcggcggcgaaccttacggt
tgcctggtaggcgattactacttcgaccagtcgccgccggatgtcgagctgctgggtgaa
ctgtcaaaggtctgtgcagccatgcactcgccgtttattgcggccgcatcgcctaccgta
atgggcatgggctcgtggcaggaactgtccaacccgcgtgacctgaccaaaattttcacc
actccggaatacgccggctggcgctcgctgcgtgagtccgaggacgcacgctacatcggc
ctgaccatgccgcgcttcctggcacgtctgccttacggtgccaagactgatccggtagaa
gccttcgccttcgaagaagacaccgacggtgccgacagcgccaattacacttgggcgaat
gcggcctacgccatggccgtgaacatcaaccgttcgttcaaacactacggctggtgctcg
cgcattcgcggtatcgagtccggtggtgaggtgcagaacctgcctgcgcacaccttcccg
accgacgatggcggtgtggacatgaaatgtccgactgaaattgccatctccgaccgtcgc
gaagccgaactggccaagaacggtttcatgccgttgctgcacaagaagaacacggatttt
gccgcgttcatcggtgctcaatcgctgcagaagcctgccgaatatgacgatccggatgcg
accgccaacgccaatctggcagcgcgtctgccttacctgttcgccacatgccgtttcgcg
cattacttgaagtgcatcgtgcgtgacaaggtcggctcgttcaaagagaaggatgagatg
cagcgctggttgcaggactggatcctgaactacgtcgatggtgatcctgcgcactctacc
gagaccaccaaggcccagcacccactggctgcggccgaagttgtcgtggaagacgtagaa
ggcaatccaggttactacacctcgaaattcttcctgcgcccgcactaccagctcgaaggt
ctgacggtatcgctgcgtctggtttcgaagctgccgtcggcaaaaagcgcctga
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