Pseudomonas phytophila: K3169_01815
Help
Entry
K3169_01815 CDS
T09747
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppao
Pseudomonas phytophila
Pathway
ppao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3169_01815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppao03019
]
K3169_01815
Enzymes [BR:
ppao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K3169_01815
Messenger RNA biogenesis [BR:
ppao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K3169_01815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UXZ96674
LinkDB
All DBs
Position
complement(404107..406014)
Genome browser
AA seq
635 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRNGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDMSAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGGGGGRK
DKGKDKGKEKPAAAAGERPARKPREQQKPRGEGAPAREQRASNPRAAAPRPAADRAPDEF
LDDEVDNFGNRADYVSPYKDKNQSRGRRPGAPAASTGTGAAPAARAPRPSGPRSSGGGAS
TGTPPAKRNGPRNGAPRDGQARRDENPRNRRPARDDSARQEPAVRGPRDSQSQPQPKIMH
KESKSDRFPSAEQLDQLPTRPRGEKPALLTRNREG
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctctagttcgcgccatcgaggcagcgggc
tatacccagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgccgcccagacaggtactggtaaaaccggtggtttcgcccttccgattctg
gaacggttgtttcccaacggtcatccggacaaatctcaacgtcacggcccgcgccaaccg
cgcgtactggtcctgaccccgactcgcgaactcgccgctcaggtgcatgacagcttcaag
ctgtacgcccgcgatctgaagttcgtcagcgcctgcatcttcggtggcgtcggcatgaac
ccacaggttcaagccatggcccgtggcgtagacgtgctggtggcctgccctggccgtctg
ctcgatctggccggtcaaggcagtgtcgacctgtcccacgttgaaatcctcgtgctcgat
gaagccgaccggatgctcgacatgggcttcgtacacgacgtgaagaaagtgctcgcacgt
ctgcccgccaagcgtcagaacctgctgttctcggcgacgttctccaacgacatcacggcg
ttggcaggcaagctgttgcacaacccggagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgagcaacgcgtgttccgcctgcccgccaaccacaagcgttcgctgctg
gcgcacctgatcactcagggtgcctgggagcaagtgctggtcttcactcgcaccaaacac
ggcgcaaaccgtctggccgagtacctggacaaacacggtcttaccgctgtggcgatccac
ggtaacaagagccagaacgctcgcaccaaagcgctggccgatttcaaggccggtgaagta
cgcatcatggttgcgactgacatcgccgctcgcggcctggatatcgaccagttgccgcac
gtggtcaacttcgaactgccgaacgtagacgaagactatgttcaccgcatcggtcgtaca
ggccgtgcaggccgtaacggcgaagcgatttcgctggttgctccggacgaagaaaagctg
ctcaaaagcatcgagcgcatgaccaagcagaagattgccgatggcgatctgatgggcttc
gacatgtccgcagtagaagccgagaagcctgaagttcgcgagcgtccggacgtgcgtaac
ccacgcaatccgcgcggccctcgtggcgatggtccgaacggcggtggcggtggtcgcaaa
gacaaaggcaaagataagggcaaggaaaaaccggcagccgctgctggtgaacgtccggcc
cgcaagccgcgtgaacaacagaagcctcgcggtgaaggtgctccggctcgcgaacagcgt
gcgtcaaatcctcgcgcagctgcaccgcgcccggctgcagatcgcgccccggacgagttt
ctggatgacgaagtggataacttcggcaaccgcgctgattacgtcagtccgtataaggac
aagaaccagagccgcggtcgtcgtcctggcgctccggcagccagcacgggtaccggcgct
gctccagccgctcgcgccccgcgcccaagtggtccgcgcagtagtggcggtggtgcatcc
accggtacgccaccagccaagcgcaacggccctcgtaacggtgctccacgcgatggtcag
gctcgccgtgacgagaacccgcgcaaccgccgtccggcacgcgatgactcggcccgtcag
gaaccggcagttcgcggtcctcgcgacagccagagccagccgcaaccgaagatcatgcac
aaagagtcgaaaagcgaccggttcccgtccgctgaacaactcgatcagttgccaacccgc
ccacgcggtgaaaaaccagccctgctgacccgcaaccgcgaaggttaa
DBGET
integrated database retrieval system
