Pseudomonas phytophila: K3169_03700
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Entry
K3169_03700 CDS
T09747
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ppao
Pseudomonas phytophila
Pathway
ppao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3169_03700 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppao03019
]
K3169_03700 (rnr)
03016 Transfer RNA biogenesis [BR:
ppao03016
]
K3169_03700 (rnr)
Enzymes [BR:
ppao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K3169_03700 (rnr)
Messenger RNA biogenesis [BR:
ppao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K3169_03700 (rnr)
Transfer RNA biogenesis [BR:
ppao03016
]
Prokaryotic type
tRNA degradation factors
K3169_03700 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
TRAM
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
UXZ97024
UniProt:
A0ABY6FGH9
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All DBs
Position
877788..880418
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AA seq
876 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLSDRGSPASREQLVEEFGLTTEDQFEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVISRAHESVVGRYFEESGIGFVIPDNPKIQQEV
LVTPGRNNNAKIGQFVEVKITHWPTPRFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKENRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDAESQVRGTSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKTGEMTDYVFYEAVIHSHARLTYNKVSTMLEQPKSSDARQLRGEYPDVLP
HLKQLYALYKVLLGARHVRGAIDFETQETRIIFGTERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLE
TVRDRPDYHLIQTVMLRSLSQAVYSSDNNGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIRSKQDTPHVRRAGAAVIPKARIYPYDDAILEQLGEQCSMNERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPLHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKRRGAEPQPVEKAAASERAPSK
RPAKAKAKASAEPEAYRPSDAAAKNAEVRKSRELKQALLAEAKGGSKASSGKSGKAGSAP
SSDRPAKPSKHRKGPPKAGSAPAAKSGGARKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctatccccagccgtgaattgattctggctcacctctccgatcgcggttcgcctgcgagc
cgtgagcagctggtggaagaatttggcctgacaactgaagatcagttcgaagccctgcgc
cgccgtttgcgagcaatggagcgcgacgctcagttgatctacacccgtcgtggtacctat
gccccggtggacaagctggacctgatcctggggcgtatctccgggcatcgtgatggtttc
ggcttcctggttcctgacgatggcagcgatgacctgttcatgagtccggcccagatgcgt
ctggtgttcgatggagaccgtgccctggcgcgcgtttccggcctggaccgccgcggtcgc
cgcgaaggcgtgatcgtcgaagtgatttcccgcgcccacgagtccgtggtcggccgatac
ttcgaagagagcggcattggttttgtcattcctgacaatccaaaaattcagcaggaagtg
ctggttactcccggtcgcaataacaacgcgaagatcggtcagttcgtcgaggtgaaaatc
acccactggccaacgccgcgcttccagcctcagggcgatattgtcgaggtcgtaggcaac
tacatggcgcccggcatggaaatcgatgtcgcgctgcgtacctacgatattcctcacgtc
tggccagaggccgtgcttaaagaagccgccaaactcaagccggaagtggaagaaaaagac
aaagaaaatcgcgtcgacctgcgccatctgccgttcgtcaccatcgacggtgaagatgct
cgcgacttcgatgacgctgtttattgcgaagccaagcccggcaaattgcgtctgttctcg
ggtggctggaagctctacgtcgctatcgctgacgtgtcgagctacgtgaagatcggctct
gctctggacgccgagtcgcaggtgcgtggcacctcggtttacttccccgagcgggttgtg
ccaatgctgcctgagcagctttccaacggcttgtgctcgctgaatccgcacgttgatcgt
ctggccatggtttgtgagatgaccatctccaaaaccggcgagatgactgattacgtgttc
tatgaagctgtcatccactcccatgcgcgtctgacctacaacaaggtcagtaccatgctg
gaacagccgaaaagcagcgacgctcgccagttgcgtggcgaataccctgacgtgctgccg
cacctgaagcagctttatgcgctgtacaaggtgttgctcggtgctcgtcatgtgcgtggc
gctatcgattttgaaacacaggaaacccgcatcatcttcgggaccgagcgcaaaatcgct
gaaatccgcccgactacgcgtaacgatgctcacaagctgatcgaggaatgcatgctggct
gctaacgtcgccactgccgagttcctcaagaagcacgaaattcctgcgctttaccgcgtg
cacgatggcccgccgcctgagcgtctggaaaaactccgtgcgttcctgggtgagctgggt
ctgtctcttcacaaaggcaaggacggtccaactccgaaggattatcaggcgttgctggaa
accgtacgtgatcgtccggactatcacctgattcagaccgtcatgctgcgttcgttgagt
caggcggtttacagctctgacaataacggccacttcggtctgaattacgaggcgtatacc
cactttacctcgccgattcgtcgttatccggacctgctgactcaccgcgcaatccgcagt
gtgatccgctcgaagcaggacaccccgcacgtgcgccgagcgggcgccgcggtaatcccg
aaagctcgtatctatccgtatgacgatgccattctcgaacagttgggcgaacagtgttcg
atgaacgagcgccgcgccgatgaagctacgcgtgacgtggtcaattggctcaagtgtgag
ttcatgaaagaccgcgtaggcgaatctttccctggtgtgatcaccgctgtgactggtttt
ggtctatttgtagaactgactgatatctatgtcgaaggtctggtgcacgtcactgctttg
ccgggcgattattatcacttcgatccgctgcatcaccgcctggcgggcgagcgtaccggt
cgtagcttccgcttgggcgataccgttgaagtgcgcgtcatgcgcgttgatctggatgag
cgcaagatcgacttcgagatggccgagaaaaccatcagcgccccaattggccgcaagcgt
cgcggtgcagagccgcagccagttgaaaaagccgctgcttcagagcgcgcaccgagcaag
cgtccggccaaggctaaagccaaggccagcgctgagccagaggcctaccggcctagtgat
gcagccgcgaaaaacgctgaagtgcgcaaaagtcgcgaactgaaacaggctctgttggct
gaagcgaagggtggtagcaaggcatcgtcgggaaagtccggtaaagccggttctgcgcca
tcatcggacagacctgctaaacctagcaaacaccgtaaaggcccgccgaaagcgggttct
gctccagccgcgaaaagcggcggggcgcgcaagcctaaggccaagtcatga
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