Pseudomonas phytophila: K3169_06060
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Entry
K3169_06060 CDS
T09747
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ppao
Pseudomonas phytophila
Pathway
ppao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
K3169_06060 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppao03400
]
K3169_06060 (sbcB)
Enzymes [BR:
ppao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
K3169_06060 (sbcB)
DNA repair and recombination proteins [BR:
ppao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
K3169_06060 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K3169_06060 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K3169_06060 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UXZ97456
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All DBs
Position
1386463..1387893
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AA seq
476 aa
AA seq
DB search
MTSTIFWYDYETTGINPRNDRPLQMAGIRTDAELNEIEAPVNIHCQPSDDILPHPAACMI
TGITPSTLAEKGLCEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAR
EWQSGNSRWDLIDVVRAAYALRPEGIVWPEDDGRVTLKLERLTAANGIDHGQAHDALSDV
RATIALARLVREKQPRLYDYLFELRSKQNVQQQIRLMEPLVHISGRFSAARHYLGVVLPL
AWHPQNRNALIVCDLHQDHLPLLEQDAHILRQRLYTRREDLAEGELPVPLKLLHINRCPV
IAPLKVLRAEDQQRLNLDMTVFSERVRHLNEAQALWQEKLNTIYAADDFVASEDPEQQLY
DGFIGDRDRRLCEQVRNAEPETLGSQAWPFDDARLPELLFRYRARNFAETLNAEEQQRWL
VFCRTRLTVPESGAPNTLQSFTQALVELSLSATPAQLEILREWQDYVEALRQRLGL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccaccatcttctggtacgactacgaaaccaccggtatcaatccgcgcaatgat
cgcccgttgcagatggcgggtatccgtacggatgccgaactcaatgaaattgaggcgccg
gttaatattcactgccagcccagcgacgatattcttccgcatcctgccgcatgcatgatt
acgggtatcacgccgtccacgctggccgagaaggggttgtgcgaagctgatttcatgacc
cgtgttcatgcccagcttgctgcgccgggcacgtgcggagcgggctacaacactttgcgc
ttcgatgatgaaatgacgcgctacagcctttaccggaatttctttgatccttatgcccgt
gagtggcaaagcggaaacagtcgctgggacttgattgatgtggtgcgcgctgcctatgca
ctgcgaccggaaggcattgtctggccggaagatgatggtcgggtaacgcttaagcttgag
cggttgacggctgctaatggtatcgatcacggacaggctcatgacgctttgtctgatgtg
cgggcgactattgctctcgcgcgtctggttcgtgaaaaacagccccgtctttacgattat
cttttcgagttgcgcagcaagcagaacgtccagcaacagatacggctgatggaaccgctg
gttcatatctccgggcgcttttcggcggcacgtcattatctgggggttgtgcttccgctg
gcctggcatccgcaaaatagaaacgcactgattgtgtgcgatttacatcaggatcatttg
ccattactggagcaggatgcacacatattgcgacaacggttatatacccgtcgcgaggat
ttggccgagggcgaactgccggtcccccttaaacttttgcatataaatcggtgcccggtg
atcgcgccgctgaaggtgctgagagctgaagatcagcaacgcttgaatctggacatgaca
gtgtttagcgagcgagtacgtcatctcaatgaggcccaggcgctctggcaggaaaagctg
aacaccatttatgccgctgatgactttgttgccagtgaagatcccgagcaacaactttat
gacggatttattggtgaccgtgatcgcaggctttgtgagcaagtgcgcaatgcagagcct
gaaacgttaggcagccaggcatggcctttcgatgatgcgcgtttgccagagttattattt
cgctatcgggcgcgtaattttgctgaaaccttgaatgcagaagagcaacagcgctggctt
gttttttgtaggacacgtctgacggtgccggaatccggggcgcctaataccctgcaaagt
tttactcaggcacttgtggaactatcccttagtgctacccctgcgcagcttgagatatta
cgtgaatggcaggactacgtagaggctctgcgccagaggctgggcctttga
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