Pseudomonas phytophila: K3169_11740
Help
Entry
K3169_11740 CDS
T09747
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppao
Pseudomonas phytophila
Brite
KEGG Orthology (KO) [BR:
ppao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppao03032
]
K3169_11740 (topA)
03400 DNA repair and recombination proteins [BR:
ppao03400
]
K3169_11740 (topA)
Enzymes [BR:
ppao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K3169_11740 (topA)
DNA replication proteins [BR:
ppao03032
]
Prokaryotic type
DNA Topoisomerases
K3169_11740 (topA)
DNA repair and recombination proteins [BR:
ppao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K3169_11740 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
UXZ98483
LinkDB
All DBs
Position
2638841..2641450
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPVKRGKAAVGEG
PVLTPKEKAKKQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR
EGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIARVNAQQARRFLDRV
VGYMVSPLLWQKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGANV
RFEVARENGEAFKPLNEAQAMAALEKLKASSYSIAKREDKPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVSMARDYIEAEFGKKYLPESPNV
YSSKEGAQEAHEAIRPSDVNTHPSKLSGMERDAERLYELIWRQFVACQMPPAQYLSTTVS
VAAGTFELRAKGRILKFDGYTRALPQMTKPGDDDVLPDMAQGETLKLIKLDPSQHFTKPP
ARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSESF
SNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFRKKLEVAEAPDSGMRSNEPVMTD
IPCKVCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLTPGDEIAEDDEGESESRVLR
GKHRCHICSTAMDAYLLDEKRKLHICGNNPDCVGFEVEEGNYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNPDCKNTRKLLKSGDAAPPKMDPVKMPELKCDKVDDTYILRDGAS
GLFLAASQFPKNRETRAPLVMEIAPHKDEIDPKYHFLCDAPKKDPDGRPTVIRYSRKTKE
QYVQTEVEGKPTGWKAFYDGKAWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggctaaggccaagaccatcaacaagtat
ttgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagtaaagaacccgtcaaacgtggcaaggccgcggttggcgaaggg
ccggtgctcacgcctaaagagaaggcgaagaagcagctggtcgcccgcatgggcgtcgat
ccggatcatggctggaaagccaagtacgaaatccttcccggtaaagagaaggtgatcgaa
gagctgcgtcggctcgccaaggatgctgacaccatctatctcgcgacggacttggaccgc
gagggggaagccattgcctggcacctgcgcgaagccattggtggggatgacagccgctac
aagcgcgtggtgttcaacgagattaccaagaaagccattcaggaagcgttctccaagccg
ggcgagctggatatcgcccgcgtcaacgctcagcaggcacgccgtttcctcgaccgggtc
gtgggttacatggtgtcgccgctgttgtggcagaagatcgctcgtggcctgtccgccggt
cgtgtgcagtcggttgccgtaaagctggtagtggagcgtgagcgggaaatccgggcgttc
aaccctgaagagtattgggaagtgcacgctgacctgggcactgccaagggcgccaacgtg
cgtttcgaagttgcccgggagaacggcgaagcgttcaagccgctcaacgaagctcaagcc
atggcggcgctggaaaagctcaaggcttccagctacagcatcgccaagcgtgaagacaag
ccgaccagcagcaagccttcggcacctttcatcacctcgaccctgcagcaggctgccagt
aaccgcctgggctttggcgtgaagaaaaccatgatgatggcccagcgtctgtatgaagcg
ggttacatcacttacatgcgtaccgactccaccaacttgtccgctgacgcggtaagcatg
gcgcgcgattacatcgaagccgagttcggcaagaagtacctgccggaatcgccaaacgtc
tacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccttctgacgtgaac
acgcatccgagcaagctgagcggcatggagcgcgatgctgagcgcctgtatgagttgatc
tggcgccagttcgttgcatgccagatgcctccggcgcaatacctgtcgactactgtcagt
gtcgcggccgggaccttcgagttgcgtgccaagggtcgtatcctcaagtttgacggttac
acccgtgccttgccgcagatgaccaagccgggcgatgacgacgtattgccggacatggct
cagggcgaaaccctgaaactgatcaagctcgacccgagccagcacttcaccaagccgcct
gcgcgttactcggaagcgagcctggtaaaagagatggaaaaacgtggtatcggtcgtccg
tcgacttatgcggcaatcatctcgaccattcaggatcgtggttatgtagcgctgcacaat
cgccgtttctactccgaaaaaatgggcgatatcgttaccgagcggctgtccgagagcttt
tccaacctgatggactatggcttcacggccggtatggaagaaaatctcgatgacgttgcc
caaggcgaacgtgactggaagaacgtgctcgacgagttctacggtgatttccgcaagaaa
ctcgaagtggctgaagcgccggacagcgggatgcgttccaacgaaccggtgatgactgat
attccgtgcaaggtgtgcggccgcccgatgcagattcgtactgcatctaccggtgtgttc
cttggttgctcgggttacagcctgccaccgaaagaacgttgcaaggctaccgtcaacctg
acgccgggcgatgaaatcgccgaagacgacgaaggtgaatccgagtcccgtgtcctgcgc
ggcaagcatcgctgccatatctgcagcacggcaatggatgcttacctgctggatgagaag
cgcaagctgcacatctgcggtaacaacccggattgcgttggctttgaagtggaagagggc
aactaccggatcaagggttacgaaggtccaagcctggagtgtgacaagtgcggtagtgag
atgcagctcaagacgggccgcttcggcaagttctttggctgtaccaatcctgactgcaag
aacactcgcaagctgctcaagagtggcgacgcagctccaccgaagatggatccggtgaag
atgcctgagctcaagtgcgataaggtcgacgatacgtacattctgcgtgacggcgcatcc
gggttgttcctcgcggccagtcagttcccgaaaaatcgtgaaacccgcgccccgctggtc
atggagattgcaccgcacaaggacgagatcgatccgaagtatcacttcctgtgtgatgca
ccgaaaaaagatccggacggacgcccaacagtgatccgctacagccgcaagaccaaagag
cagtacgttcagactgaagtggaaggcaagccaaccggctggaaagcgttctacgacggc
aaggcctggaaggtcgaagacaagcgttga
DBGET
integrated database retrieval system
