Pseudomonas phytophila: K3169_12440
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Entry
K3169_12440 CDS
T09747
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
ppao
Pseudomonas phytophila
Pathway
ppao00550
Peptidoglycan biosynthesis
ppao01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppao00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
K3169_12440 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ppao01002
]
K3169_12440 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppao01011
]
K3169_12440 (dacB)
Enzymes [BR:
ppao01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
K3169_12440 (dacB)
Peptidases and inhibitors [BR:
ppao01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
K3169_12440 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
ppao01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
K3169_12440 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Peptidase_S11
DUF2997
Motif
Other DBs
NCBI-ProteinID:
UXZ98607
LinkDB
All DBs
Position
complement(2804385..2805851)
Genome browser
AA seq
488 aa
AA seq
DB search
MIKSLRPLFFATLLLPLALPAHAAPVNTSLPPKVQQALKASKLGNDALSLVMLPLNGQGT
PTVFNADVSVNPASTMKLVTTYAALEILGPTHQWKTEFFTDGTLNNGVLRGNLYLKGGGD
PKLNMEKLWLLMRDLRANGVQQVTGDLVLDRSHFVQPQLPVFDDDGNDRNKPFLVKPDSL
MVNLKALRFITRNDGGKVMVSVEPPIATIRVDNQVKAIASKQCGDVRYNPVTQPDGTVNV
TVTGQLGDGCNSQTYLSLLDHPTYAAGAVRAIWQELGGTIQGKDRVDVVPGSAKLLARAF
SPDLVEVIRDINKFSNNTMAQQLFLSLGSEFRNDADGDDAKAAQRVIRQWLAKKGITAPH
LVMENGSGLSRDERVSAREMAILLQAAWKSPYAAEFMSSMPLAGMDGTMRKRLKRTPLLG
EAHIKTGTLNNVRAIAGFSRDSNGNTWAVVAILNDPRPWGASSVLDEVLVELYRQPKLGD
NTVSIRQQ
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaatcattgcgtccactgttttttgccacccttctattgccactggccttgccg
gctcacgccgcgcccgtcaacacttcgctcccccccaaggtccagcaagcactcaaagcc
agcaagctgggcaatgacgccttgtcgctggtaatgctacccctcaacggtcaaggcacc
ccgaccgtattcaatgccgacgtctccgtaaacccggcatcgaccatgaagctggtcacg
acgtacgcagcgctggaaatactgggcccaacccaccagtggaaaaccgaattctttacc
gatggcacgctcaataatggcgtactgcgcggcaacctttacctcaagggcggcggcgac
cccaaactgaacatggagaagctctggctgttgatgcgcgacctgcgggccaatggcgta
caacaggtaaccggtgacctggtactggatcgcagccactttgtacaaccgcaattgccg
gtgttcgatgatgacggcaacgatagaaacaagccgtttctggtcaaaccggactcgctg
atggtcaacctcaaggcgctacgcttcatcacgcgtaacgacggcggcaaggtcatggtt
tcggtggaaccgcctattgcgaccattcgcgtcgataatcaggtcaaagccatcgcgtcc
aaacagtgcggtgacgttcgttacaacccggtcacgcagccagatggcaccgtcaatgtg
accgttacgggccaactcggtgacggctgcaattcgcagacttacctgtcgctgctcgac
catccgacttacgcagcaggcgcagtgcgcgctatctggcaggaactgggcggcaccatc
cagggcaaagaccgggtagacgtcgtaccgggcagcgccaagctgctggcaagggctttt
tcgccggatctggttgaagtcattcgtgatatcaacaaattcagtaacaacaccatggcc
cagcagttattcctgagcctcggttcagagttccgcaatgatgcagacggtgacgatgcc
aaggcagcacagcgggtcattcgccagtggctggccaagaaaggcatcaccgcaccgcat
ctggtgatggagaacggctcggggttgtccagggatgagagggtcagcgcccgcgaaatg
gccatcctcctgcaggcggcgtggaaaagcccctacgctgcagagttcatgagttcgatg
ccactggcaggcatggacggcacgatgcgcaaacgcctcaaacgcaccccgctactgggt
gaagcccacatcaagaccggcaccctgaacaacgtccgcgctattgccggcttcagtcgc
gacagcaacggcaacacttgggctgtggtcgccatcctcaacgacccacgcccgtggggc
gcgtcttcggtgctcgatgaagtactggtcgagttgtatcgccagccaaagctgggtgat
aacaccgtgtcgatacggcagcagtga
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