Pseudomonas phytophila: K3169_17645
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Entry
K3169_17645 CDS
T09747
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppao
Pseudomonas phytophila
Brite
KEGG Orthology (KO) [BR:
ppao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppao03016
]
K3169_17645
Enzymes [BR:
ppao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
K3169_17645
Transfer RNA biogenesis [BR:
ppao03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
K3169_17645
Prokaryotic type
tRNA splicing ligases
K3169_17645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF1414
Motif
Other DBs
NCBI-ProteinID:
UXZ94190
UniProt:
A0ABY6F8J2
LinkDB
All DBs
Position
complement(3942420..3943646)
Genome browser
AA seq
408 aa
AA seq
DB search
METNTYQLLEVINGKPIKMWTEGVPVENEAKEQLMNTARMPFIFKHMAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTAADLPDNLAGLRSAIEKAVPHGRTSTRS
RRDKGAWDEIPQQADNVWGALYPRFKLITDKYPSLANTNNRQHLGTLGTGNHFIEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIQMAQADMRQHIADLPHRDLAYFEEGSQHFDDYVEAV
GWAQDFARQNRELMMQAVIQATRQVISKPFQVALEAVNCHHNYVQKEQHFGEEVLITRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKNTFTVEDQIRA
TAHVECRKDAAVIDEIPMAYKDIDKVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgaacacctaccaactgctggaagtcatcaacggcaaacccatcaaaatgtgg
accgagggcgtgccggtagagaacgaagccaaagagcaattgatgaatacggcgcgcatg
ccgttcattttcaaacacatggccgtcatgcctgacgttcatctgggcaaggggtccacg
atcggcagtgtgattccgacggtgggggcgatcattccggcggctgtcggtgtggatatc
ggctgcggcatgattgccgcgcgaacctctctcacggcggcggacctgccggacaacctg
gccgggctgcgcagcgccattgagaaagcggtgccccatggccggacgtcgactcgttcc
cgtcgggacaaaggcgcctgggacgaaatcccgcaacaggcggataacgtgtggggcgcg
ctgtatccgcgcttcaaattgatcaccgataaatacccttcgctggctaacaccaacaac
cgccagcatctgggaacgctgggcaccggcaaccacttcatcgaggtctgcctggacgag
gccaaccgtgtctggttcatgttgcacagcggctcccgcggggtagggaacgccatcggt
aacctgttcattcagatggcccaggcagacatgcggcagcacattgcggatctgccgcat
cgtgatctggcctatttcgaagagggcagtcagcacttcgatgattatgtggaagccgtg
ggatgggcgcaggattttgcccggcagaacagagaactgatgatgcaggcggtgattcag
gccacacgtcaggtgatcagcaaaccgtttcaagtggcgctggaagccgtcaactgccac
cacaactacgtgcaaaaagagcagcattttggtgaggaagtgctgatcacccgcaaaggt
gcggtgtcggcgaagaagggcgaactggggattatccccggctccatgggggccaagagc
ttcatcgtccgcggtttgggcaatgaagaggcattctgctcttgcagccacggtgccggg
cgcaccatgagccggaccaaagccaagaacacgttcactgtggaagaccagattcgcgcc
acggctcacgttgagtgccgaaaggacgccgcagtgatcgacgaaattccaatggcctac
aaagacatcgataaggtcatgcacgcccagcgtgagttggtggaagtgctgcataccttg
cgacaggtcgtatgcgttaaaggatag
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