Pseudomonas phytophila: K3169_17650
Help
Entry
K3169_17650 CDS
T09747
Symbol
rtcR
Name
(GenBank) RNA repair transcriptional activator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
ppao
Pseudomonas phytophila
Brite
KEGG Orthology (KO) [BR:
ppao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppao03000
]
K3169_17650 (rtcR)
Transcription factors [BR:
ppao03000
]
Prokaryotic type
Other transcription factors
Others
K3169_17650 (rtcR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA_lid_14
AAA
Mg_chelatase
AAA_16
AAA_22
NACHT
AAA_30
MCM
AAA_2
AAA_19
BrxC_BrxD
AAA_7
ATPase_2
AAA_14
IstB_IS21
TniB
ABC_tran
bpMoxR
AAA_33
AAA_29
ResIII
Motif
Other DBs
NCBI-ProteinID:
UXZ94191
UniProt:
A0ABY6F980
LinkDB
All DBs
Position
3943916..3945532
Genome browser
AA seq
538 aa
AA seq
DB search
MSVIRTVAIGFIGSKLDRVGKGANRWNHWRPSVGLCQQEDMQIHRLELIHGVTARDVSLA
QRVAEDIRQISPQTEVRLHPMTLRNAWDFEEVYGALHDFTTAYDFDTDNEQYLVHITTGT
HVAQICWFLLTEARYLPARLIQTSPSRRDNDEARATGTHSLIDLDLSRYDRIASRFTHKR
LEGLAFLKSGIATRNAAFNRSIEQIEQVAVRSKAPMLLIGPTGAGKSFLARRIYELKRSR
HQIEGRFVEVNCATLRGDGAMSTLFGHIKGAFTGALAAREGLLRAAEGGMLFLDEIGELG
ADEQAMLLKAIEEKRFLPMGSDKEVASDFMIIAGTHRDLRDRVAQGLFREDLYARINLWT
FNLPGLARRREDIEPNIDFELERHAREHGRLIRFNREARQRYMAFANHEDSIWSGNFREL
SASITRMATLADSGRIDETQVEEELQRLRYAWALNDDRNDGQDEPSPILDEGIELDLFDR
LQLEAVLKVCRNARSLSDAGRKLFDVSRLNKANPNDADRLRKYLARFGIEWKQINGQD
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaatacgcactgtagccatcggcttcatcggttcaaaactcgaccgcgtcggc
aagggtgccaaccgctggaatcactggcgtcccagcgttggtctgtgccagcaagaggat
atgcagattcaccgactggagctgattcacggcgtgaccgcccgggacgtcagtctggcg
cagcgagtggccgaggatatccggcaaatatccccgcagactgaagttcgccttcacccc
atgacgcttcgcaacgcctgggacttcgaggaggtatatggcgcgctgcatgacttcacc
accgcctacgatttcgacactgacaatgagcaatacctggtgcacatcaccaccgggact
cacgtcgcacagatatgctggttcctgctcaccgaagcccgttacctgcccgcccgactg
attcagacttccccgtctcggcgagacaatgatgaagcgcgagccaccggcacccattcg
ctgatcgatctggacctctcgcgctacgaccgcatcgcgtcacgcttcacccataaaaga
ctggagggcctcgcgtttctcaagtcaggcattgctacgcgcaacgctgcgttcaaccgc
tccattgagcagatcgaacaggtcgccgtgcgctccaaggcaccgatgctgctgattggt
ccgaccggcgcaggcaaatcgtttctggcaagacgcatctacgaactcaagcgcagccga
caccagatcgaaggacgctttgtcgaagtgaactgcgccaccctgcgcggtgatggcgcc
atgtcgaccttgttcgggcatataaaaggcgcgtttaccggcgctctggctgctcgcgaa
ggcctgttgcgggcagccgaaggcggcatgttgtttctggacgaaatcggtgaactgggc
gcagatgaacaagcgatgctgctgaaagccattgaggagaaacgtttcctgcccatgggc
tcggacaaggaagtggccagcgacttcatgattattgccggcactcaccgcgacctgcgc
gaccgggtggcgcaggggctattccgcgaagacctgtacgcgcggatcaacctctggacg
ttcaacctgccaggcctggccagacgacgcgaagacatcgagccgaatatcgacttcgag
ctggaacgtcacgcccgcgaacatgggcgcttgatacgcttcaaccgcgaagcccggcag
cgctatatggcgttcgccaatcatgaggactcgatatggtctggcaactttcgcgagctg
tcagcctcgatcacgcgcatggcaacgctggctgacagcggacgcatcgatgaaacccag
gtcgaagaggaactgcagcgcttgcgctacgcatgggcgctgaacgacgatcggaacgac
ggacaggatgagccatcaccgatactggacgaaggtatcgaactggatctgtttgaccgt
ttgcaactggaggcggtgctcaaggtgtgccgcaatgctcgaagcctgtcggatgccgga
cgcaaactgtttgacgtctcgcgtctgaacaaggcgaaccccaatgacgcagatcgtctg
cgcaagtatttggcgcgttttggcattgagtggaagcaaatcaatggacaggattaa
DBGET
integrated database retrieval system
