Pseudomonas phytophila: K3169_21910
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Entry
K3169_21910 CDS
T09747
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppao
Pseudomonas phytophila
Pathway
ppao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3169_21910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppao03019
]
K3169_21910
03009 Ribosome biogenesis [BR:
ppao03009
]
K3169_21910
Enzymes [BR:
ppao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K3169_21910
Messenger RNA biogenesis [BR:
ppao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K3169_21910
Ribosome biogenesis [BR:
ppao03009
]
Prokaryotic type
rRNA helicases
K3169_21910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
UXZ94979
LinkDB
All DBs
Position
complement(4873866..4875575)
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AA seq
569 aa
AA seq
DB search
MGLCGCTRGRPMTQEFGGFAAFELHPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQ
AQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAV
YGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDD
LEVIFKAMPETKQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHA
DQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVID
SLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLV
TPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVGDAESTHGELLDRL
TADIGCSPRALAAALLRKATNGQALTLAAIERERPLVPNNAPRERSDRSSSDRPERSGDR
ERRAPVPLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELP
EDGLERLLTKLKDTRVAGKQLKLRRYRED
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgggtctttgcggatgcactagaggcagacccatgacccaggaattcggcggcttcgcc
gcttttgaacttcatccaaatatccttgcagccgttattgccactggctacgaagagcct
tcggccattcagcagcagtcgatcccgattatcatggccggccatgacatgatcggccag
gcgcaaaccggtacgggtaaaaccgccgcgttcgcactgccaatcctgcatcgtatcgac
ccaagcaagcgcgagccgcaagcactgattctggcgccgactcgcgaactggccctgcag
gttgctaccgctttcgaaacctacgccaagcaaatgccgggcgttaccgttgtggctgtc
tacggcggtgcgccgatgggcccgcaactgaaagcaatccgcaatggcgcacaaatcgtt
gtcgccacgccgggccgtctgtgcgatcacctgcgtcgtgacgagaaagtcctcgcgacc
gtgaaccacctggttctcgacgaagcggacgaaatgctcaagctgggcttcatggacgac
ctggaagttatcttcaaggccatgccggaaaccaagcagaccgttttgttctcggctact
ttgccgcaatcgatccgtgccatcgccgagcgccacctgcgcgatccgaagcacgttaag
attcagaccaagacccagaccgttaccgcgatcgagcaggctcacctgctggttcacgct
gaccagaagacctcagctgtactgagcctgctggaagtcgaagatttcgacgccctgatc
atgttcgtacgcaccaagcaagcgaccctggatctggcaagtgcccttgaagccaaaggc
tacaaggctgctgcactgaacggtgacattgcccagaaccagcgtgagcgcgttatcgac
tccctcaaggatggccgcctggacatcgttgtagcgaccgacgttgctgcccgtggtctg
gacgttccgcgcatcactcacgtattcaacgttgacatgccgtacgacccagagtcctac
gttcaccgtatcggccgtactggccgtgccggtcgcgaaggtcgtgcactgctgctggtg
actccgcgtgagcgccgcatgctgcaagtgatcgagcgtgtaaccggtcagaaagttgct
gaagtccgcctgccggatgctcaggctgttctcgatgcccgcatcaagaaactgaccaac
agcctgtcgccactggttggcgatgccgagtcgactcacggcgaactgctggatcgtctg
actgccgatatcggttgcagcccgcgcgccctggccgctgctctgctgcgcaaagctacc
aacggtcaggctctgaccctggcagccatcgagcgcgagcgcccactggtgccgaacaac
gcaccgcgtgagcgtagtgatcgttcgtcgtcggatcgtccagagcgcagtggtgatcgt
gagcgtcgcgctccggttccattggccgaaggtcgtgctcgttgccgtaccgcgctgggt
gcgcgtgatggtatcgctgccaagaacctgctgggtgcaatcctcaacgaaggcggcctg
gcccgcgaagcaatcggccgcatccaggtgcgcgacagcttcagcctggttgaactgccg
gaagatggccttgagcgtctgttgaccaaactcaaggacacccgcgttgcaggcaagcag
ttgaagctgcgtcgctatcgcgaagattga
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