Pseudomonas phytophila: K3169_26470
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Entry
K3169_26470 CDS
T09747
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ppao
Pseudomonas phytophila
Brite
KEGG Orthology (KO) [BR:
ppao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppao03019
]
K3169_26470 (hrpB)
Enzymes [BR:
ppao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K3169_26470 (hrpB)
Messenger RNA biogenesis [BR:
ppao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K3169_26470 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
AAA_30
HA2_N
Flavi_DEAD
AAA_22
Cas3-like_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UXZ95809
LinkDB
All DBs
Position
complement(5919202..5921733)
Genome browser
AA seq
843 aa
AA seq
DB search
MISLPIDAVLPDLRQALSERHEAVLEAPPGAGKTTRVPLALLEETWLAGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLESRVGPNTRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRDLFRDEQPLKILLMSATLEGERLSSLLDDAPVVRSD
GRMFPVQMQWGRPFQPGEFIEPRVVQTVLDAINDQSGSLLVFLPGQAEIRRVNQQLADAL
GSRSDIMLCPLHGELDLSAQRAAIEPAPKGIRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHEQLAAYGAAEILQ
ADLAGLALQLARWGVTPTQLVWLDVPPAAAYGQAQDLLVRLGALTREPGQEPKLTPHGQA
MAELPAHPRIAHLLLRGQALGLGSLACDVAALLGERDILRGAGADLHSRLTLLDGSERAA
RGAQGGVQRAKQLARQYRGYLRGSVSEPVSDPDHPRWLGALLALAYPDRVAQQRKAGGAE
YRLANGRAALFAEVDALMKQPWLVIADLGSRQGQREERIYMAAEFDPALFDSVLAEQVVQ
LDQLDWDEREGVFRAERQRKVGELILSREPLTGLDESAKGQALLALVRRKGLELLPWTPE
LRQWQARVALLRSLDLEQKDSSEWPDVSNNGLLERLEIWLLPYLGKVSRLSHFSNLDLSS
ILHNLLPWPLPQRLDEQAPHHLSVPSGSSVRLDYSEHPPILAVRLQELFGLADTPRIANG
RQIVKLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLIAEPTARIK
PRK
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgatttccctgcccatcgatgctgttttacccgacctgcgccaggcgctgtccgagcgc
catgaagcggtgctcgaagccccgcccggcgcaggcaaaaccacgcgcgtgccgttggcg
ttgcttgaggaaacctggctggccgggcaaaccattctcatgctcgaaccgcgccggttg
gcagcacgggcagcggctgagcgtctggccagtgagctaggcgaaaaggtgggtgaaacg
gtcggctaccggatccgtctggaaagcagggtagggcccaatacccgtattgaagtcgtc
accgaaggcattctgacccgacgcttacaggatgatccggcgctggaaggcgtgggcttg
ctgatttttgacgagttccacgagcgcagcctggatgccgatctggccttggccctgagc
ctgaacggccgcgacctgtttcgcgacgagcaaccgctgaagatcttgctgatgtcggcc
actctggagggcgagcggctgtccagtttgctcgacgatgcgccggtggtgcgcagcgac
ggtcggatgttcccggtgcagatgcagtgggggcgaccgtttcagcccggcgaattcatt
gagccgcgtgtggtgcagacggtgctggatgcgatcaacgatcaaagcggcagcctgctg
gtgttcttgccggggcaggccgagattcggcgggtcaatcagcaactggcggatgcgctg
ggctcgcgctccgacatcatgctgtgtcccttgcacggcgagcttgatttgagcgcccag
cgtgcagccattgagcctgcgcccaaaggcattcgcaaagtggtgctggcgacgaatatt
gccgaaaccagcctgaccattgatggcgtgcgcgtggtgatcgacgccgggttggcgcga
gtcccgcgtttcgatccgggcagcggcatgacccgcctcgacacccaacgcatctcccgt
gccagcgcaactcagcgcgcgggtcgagcagggcggctggagccgggagtgtgttatcgg
ctgtggtccgaagctcaacatgaacaattggctgcttacggtgcagcggaaattcttcag
gccgatctcgcgggtttagccttgcaactggcgcgctggggcgtaacgccaacacagctg
gtctggctcgatgtaccgcccgctgcggcttacggccaggctcaggatttgttggtccgt
ctgggcgcgctgacccgtgagccggggcaagagcccaaactcacccctcatggtcaggcc
atggctgagttgcccgctcacccgcgtatcgcccatttgctcctgcgcggtcaggcgctg
ggccttggcagtctggcctgcgatgttgctgcactgcttggcgagcgcgacattttgcgt
ggtgccggtgccgatctgcacagtcgtctgacgctgctcgatggcagtgagcgtgctgcc
cgtggcgctcaaggcggcgtgcaacgggccaaacaactggctcgccaatatcgcggctat
ttgcgcggttctgtgtctgaacccgtcagcgacccagaccatccgcgctggcttggcgcg
ctgctggcgctggcgtatcccgaccgggttgcgcaacaacgcaaggcgggtggtgcggaa
taccggctggccaatggtcgtgccgccttgtttgccgaagtcgatgcgttgatgaagcaa
ccgtggttggttatcgccgaccttggcagtcgtcagggtcagcgcgaagagcgtatctac
atggcagccgagttcgatcctgcgttgtttgattcggtgttggcggaacaagtggttcag
ctcgaccaactggattgggatgagcgcgaaggtgtgttccgtgccgagcggcagcgcaag
gtgggggagttgattctaagtcgtgagccgctgaccgggctggacgagtccgccaaaggt
caggctttgctggctttggtgcgccgtaaaggccttgagctgctgccgtggacacccgaa
cttcgccaatggcaggcacgagttgctttgctgcgctcgctggatctagaacaaaaagac
agcagcgaatggccggatgtcagtaataacggtttgctcgaacggctggaaatctggttg
ctgccctatctgggcaaggtgtcgcggctcagccatttcagcaatctggacctgtcgtcg
atcctccacaatctgctgccgtggccactgccccagcgtctggacgagcaggcgccacac
cacttgagcgttccgtcggggtcatcggtgcggctggattacagcgaacacccgccaatt
ctcgcagtgcgcctgcaagagctgttcggtctggccgatacaccacgcatcgccaacggg
cggcagatcgtcaaactgcacctgctgtccccggcccgccgtccggtgcaggtcacgcaa
gacctggccaacttctggcgcagtacctatgccgaagtgaagaaggatttgaaaggaaga
taccccaagcactattggccggatgacccgctgattgccgagccgacggcgcggatcaag
ccgaggaagtga
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