Pseudomonas phytophila: K3169_27235
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Entry
K3169_27235 CDS
T09747
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppao
Pseudomonas phytophila
Pathway
ppao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K3169_27235 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppao03021
]
K3169_27235 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppao03400
]
K3169_27235 (rpoC)
Enzymes [BR:
ppao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K3169_27235 (rpoC)
Transcription machinery [BR:
ppao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K3169_27235 (rpoC)
DNA repair and recombination proteins [BR:
ppao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K3169_27235 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
UXZ95953
LinkDB
All DBs
Position
complement(6071465..6075664)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRIHETINDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKERVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTDEVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGVDGKDLLLPGTDVPAQYFLPANALVGVADGVQVAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSTFIKGDQMELTHVLVENERLNAEEKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREVDKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgatgcaatc
cgtattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcttgttctgcgccaag
atttttggtccggtcaaggattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgcgagaagtgcggcgttgaagttgcactggccaaggtccgtcgtgag
cgtatggctcacatcgaactggcatcgcctgttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgtgttctctat
ttcgagagctatgtcgtaatcgatccaggcatgaccacccttgaaaaaggtcagctgctg
aatgatgagcagtacttcgaagctctggaagagttcggtgatgacttcgacgcccgcatg
ggtgctgaagctgttcgcgagctcctgcacgctatcgatcttgaacacgagattggtcgt
ctgcgcgaagaaattccgcaaaccaactccgaaaccaagatcaagaagctgtccaagcgt
ttgaagctgatggaagccttccagggttcgggcaacctgcctgagtggatggttttgacc
gttctgccggttctgccgccagatctgcgtccattggttccgctggacggcggtcgcttt
gcgacttctgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtttgaag
cgcctgcttgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagctgtcgatgctctgctcgacaacggccgtcgcggtcgcgccattactggctcgaac
aagcgtccgctgaagtccctggctgacatgatcaagggtaagcagggtcgtttccgtcaa
aacttgctcggtaagcgtgttgactactcgggtcgttcggtaattaccgttggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggctctcgagctgttcaagcctttc
attttcggcaagctggaaatgcgtggccttgccacgactatcaaagctgccaagaagatg
gttgagcgcgagctgccggaagtctgggacgttctcgcagaagtcatccgcgaacacccg
gtgcttctgaaccgtgcgccaacgcttcaccgtctgggcatccaggcttttgaaccggta
ctgatcgaaggtaaggctattcagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccagatggccgtacacgtaccgctgacgctggaagcccagcttgaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagctaacggtgagccaatcatc
gttccttcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aaaggcgaaggtcgtgtgttcgcggatctgcaggaagttgaccgcgtattccgtgccggc
gaagccgcgctgcatgccaaggttaaagtccggatccacgaaacgatcaatgatcgtgat
ggtggcagcgtcaagaacacccgtattgtcgacaccactgtcggccgtgcgctgctgttc
caggtggttccggccggcctgtcttatgacgtggtcaaccagccaatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgttatcttc
gctgaccagttgatgtataccggttttgcctactcgactatttcgggtgtttccattggt
gttaacgacttcgttatccctgatgagaaagctcgcatcatcgacgcagctaccgaagaa
gttaaagagatcgaaagtcagtacgcctcgggcctggtaactcagggcgagaagtacaac
aaggtaatcgacctttggtccaaggcgaacgacgaagtctcgaaagcgatgatgtcgaac
ctgtccaaagagcgcgttattgaccgtcacggcgtcgaagttgatcaggaatccttcaac
tcgatgtacatgatggctgactccggtgcacggggttcggctgcacagattcgtcagttg
gcgggtatgcgtggtctgatggctaagccggacggctcgattatcgagacgccgatcacc
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctcgactcacggtgctcgt
aagggtcttgcggataccgccttgaagacagctaactccggttacctgactcgtcgtctg
gttgacgttgcccaggatctggttgttaccgaagtcgactgcggtaccgaacacggtctg
ctgatgactccacacattgaaggcggcgacgttgttgagccattgggtgagcgcgtactg
ggtcgagtaatcgcccgtgacgtattcaagcctggcaccgatgaagtcatcgtgcctgcc
ggtacgctggtagacgagaagtgggttgagttcatcgagctgaacagcatcgacgaagta
atcgttcgttcgccgatcagctgtgaaacccgttacggcatctgcgccaagtgctacggc
cgtgatctggctcgtggtcaccaggtaaacatcggtgaagcggtcggcgttattgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacattccacatcggtggtgcg
gcaagccggacctctgctgctgacagcgttcaggtgaaaaatggcggtacagtccgtctg
cacaacctgaagcacgttgagcgagtagacggccacctggtagctgtgtcccgttcgggc
gagctggccatcgctgatgactacggtcgtgagcgtgagcgttacaaactgccttacggt
gcagtgatttcggtgaaggaaggcgacaaggtcgacgcaggttcgatcgtggccaagtgg
gatccgcacactcacccaatcgtcaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagagggcatcacgatcaagcgtcagacagacgaattgaccggtatgaccaacattgaa
gttctggatgccaaagaccgtccggcagcgggcaaagatattcgcccggctgtgaaaatg
gttggtgttgatggcaaggatctgttgcttccaggtactgacgttcctgctcagtacttc
ctgccagctaacgcactcgttggtgtggcggatggtgtgcaggttgcgatcggtgatgtt
atcgctcgtatcccgcaggaaacttcgaaaactcgagacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaggcgtcgatccttgcagaagtcagc
ggtaccattgcgttcggtaaggaaaccaaaggcaagcgtcgtctggttattaccccgaac
gatggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggttaaccgcggcgaagttatctccgacggtcctagcgatccacacgacatc
ctgcgtctgctgggtgtaagtgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgataagcacatcgagaccattctgcgtcagatg
ttgcgtaaagttgaaatctccgagtctggcgattccaccttcatcaaaggtgatcagatg
gagctgactcacgtactggtcgagaacgagcgtctgaacgcggaagagaaattcgtttcc
aagttcacccgtgtactgcttggtatcaccaaggcttcgttgtccactgagtcgttcatc
tccgcggcgtctttccaagagacaacccgtgtactgaccgaagcagcagtaacaggcaag
cgcgattatctgcgcggtctgaaggaaaacgtggttgtgggtcgtttgatcccggctggt
acaggtctggcttatcacagcgagcgcaagcgtcgccgtgaagtcgacaaaccgttgcgt
gtgagcgctagcgaagtcgaagcagcattgactgaagcgttgaactcaagcggtaactaa
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