Phlebotomus papatasi: 129800414
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Entry
129800414 CDS
T10447
Name
(RefSeq) SKI2 subunit of superkiller complex protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ppap Phlebotomus papatasi
Pathway
ppap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129800414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppap03019
]
129800414
Enzymes [BR:
ppap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129800414
Messenger RNA biogenesis [BR:
ppap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129800414
mRNA degradation factors
3'-5' decay
Ski complex
129800414
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
DEXQc_Suv3
ResIII
MTR4-like_stalk
Helicase_C
MTR4_beta-barrel
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
129800414
NCBI-ProteinID:
XP_055700747
LinkDB
All DBs
Position
1:71545144..71554161
Genome browser
AA seq
1159 aa
AA seq
DB search
MEVPDNLRDYIVNPFLELLENMPMECLPSESNPDNVFDISEPLLGTTLKAKRCDVTGEVI
DFLEIDIANPDSRPDNSMSFQRAPDVSGKRSVRGSSTNYPFWPGGFDEESDEEQEAEEYP
EEDGQLLTLAPTMTHGISSTADDIEEALENLKIDQIDYTDLINSNPIANLWARKTSLEDG
KDRKKKPEVLKLSNAKDLKTIETKWAVLVDTNQAIPAATTEPALVFPFKLDNFQKHAIHQ
LEDHNHVFVAAHTSAGKTAVAEYAIALSLKHHTKAIYTSPIKALSNQKYRDFKKSFKDVG
LITGDVQIDSDASCLIMTTEILRSMLYCGSEIARDLEYVIFDEVHYITDADRGHVWEEVL
ILLPANVTIVMLSATVPNTLEFASWVGQTKKKKVYVVSTLKRPIPLKHYLYVPFVAKNKE
EIHLILDENSRFLIKGHADAVALKETTSAKIGRKLTRNQEKTMWEKLVGFLRKTDKLPVV
AFTLSRNRCDMNAESMRGCDLCTNKEKGIINSFFMKCLQSLKPPDRNLPQVKNLQYYLER
GYGVHHSGILPILKEIVEMLFQCGLVKLLFATETFAMGVNMPARTVIFDSDRKFDGTEVR
QLHPAEYTQMAGRAGRRGLDENGTVILICKAEKVPDVAVLQGMMLGKPMRLESQFKLTYA
MILNLLRVERVSVVDMMSHSYREFHSQQKLPENRAKLREIQQEFAALEPLGDNMNHICEF
YDVASEYFSCLDRVNEEVFKHPDVKKKLQPGRLVVITKGNLCNNLAAILTVNDAQRKEME
LKVAVLGDAGVSESSEKEDFWHRLLSLVTMGKIHVPENVASFTILTVKLKHIVEIVNSTV
KVQSSTVIQNWEQKQMERFKDAPWGPSSLKLVADLNHVIEEASKVDFINLYETIPLSAVD
NLKELNIHRQRLANSLACTKVSNFREQFRKVFERKMIEQRLQHLKYITSKDNMALYPDYC
NKLEVLREMHYIDEQNNITMKGRVACEMGSNELILTEIIFRNIISNLEPAEISALLSGLV
FQAKTEATPNLTTNLKEGIKIVEAINDEIFNLEQKHRVSTSLDAQAKPHLNFGLVEVVYE
WGRDKPFADIKELTDVQEGIIVRCIQQLHEILLNIKDASRVFGDPVLHKKMEDVSNAIKR
DIVFAASLYTQKDAGLIVS
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaccagacaatctgcgggattacattgttaatcccttcctggaattgcttgaa
aacatgcctatggaatgtttaccttcagaatccaatccggacaatgtttttgacatctct
gagcctctcctgggaacaaccctgaaggcaaaacgatgtgatgtgaccggagaggtaatt
gattttcttgaaattgacattgcaaatcctgacagccgtccggataactcaatgtcattc
caacgagcaccggatgtgagtggcaagagatctgtacgtggttcatcaactaactacccc
ttctggcccggtggctttgacgaagaatctgatgaggagcaagaagctgaggagtatcca
gaggaagatggacaactcttgacattggcaccaacaatgactcatggtatctccagtact
gctgatgatattgaagaggcacttgagaatttgaaaattgaccaaatagattacacagac
ttgataaatagcaatcctattgctaatctctgggcaaggaaaacttcattggaagatggt
aaagataggaaaaagaagccggaagtgctgaaattgagcaatgcaaaggatttgaagaca
attgagacaaaatgggcagttcttgtggatactaatcaagccattccggctgcaacaact
gaacctgctctggttttcccattcaaactggataatttccaaaaacatgccatccatcaa
ttggaggatcacaatcatgttttcgtggcagctcatacgtctgccgggaagacagctgta
gctgagtatgctatcgccctgagtctgaagcatcacacaaaggcaatttacacctctccg
atcaaggcactgtccaatcagaaatatcgagatttcaaaaagtccttcaaggatgtcggt
ctcatcacgggggatgttcagattgattctgatgcctcgtgcttgatcatgacaacagaa
atcttgcgttcaatgctttactgtggaagtgaaatagccagagatttggaatatgtgatt
ttcgacgaagtacactatatcactgatgctgatcgcgggcatgtctgggaggaagttcta
atcctcctgccagccaatgtgactattgtcatgttgagtgctacagttcccaataccctg
gaatttgcctcctgggtgggtcagacaaagaaaaagaaggtgtatgttgtaagtaccctt
aagcgccccattcccctcaagcactacctctacgtgccatttgtggccaagaataaggaa
gaaatccatctgatcctagacgaaaatagtcgatttctcatcaagggtcatgcagatgct
gttgccctcaaagaaacaacttcggccaaaattggtcggaaactcacgagaaaccaggaa
aaaaccatgtgggagaaattggtgggtttcctgaggaagacagacaagctccccgtggtg
gcttttaccctctcacggaatcgctgtgacatgaatgctgaatcgatgagaggatgcgat
ttgtgcacaaacaaggaaaaaggcataatcaatagcttcttcatgaaatgcctgcagagc
ctaaagcctcccgacaggaacttgccacaagtaaaaaatttgcagtactacctcgagaga
ggctatggagttcatcattcgggaattttgccaattctcaaggaaattgtagaaatgctc
ttccaatgtggcctcgtgaagctactctttgccactgaaaccttcgcaatgggcgtcaat
atgccagctaggacagtcatatttgactctgacaggaaattcgacggaactgaggtgaga
cagcttcatccggcagaatatacacaaatggccggacgagctggtcgccgtggactggat
gaaaatggaacagtaattcttatctgcaaggccgaaaaggtgccagatgtagcagtgctc
cagggaatgatgttgggaaaaccaatgcgcctagagtcccaatttaaactaacttacgcc
atgattctcaatctcttgcgcgtggagagggtatcagtggtggatatgatgtcacacagc
tatcgagaattccattcacagcagaaactcccagagaatcgagcaaaactccgagagatt
cagcaggaatttgctgcacttgaacctctcggtgataacatgaatcatatctgtgaattc
tatgatgtggcatctgaatatttctcatgtttggatcgtgtcaatgaagaagttttcaag
catcctgatgtgaaaaagaaactccaaccaggaagactagttgtgataacaaagggtaat
ctctgcaacaatttagcagcaattctcacggtaaatgatgctcagcgaaaggaaatggag
ctaaaagtggcagttttgggtgatgccggagtatcggaaagtagtgaaaaggaagacttt
tggcatcgattgctctctcttgtcacgatggggaaaattcatgtgccggaaaatgtggca
tcattcacaattctcacggtgaaattgaagcacattgtggaaattgtcaatagcacagtt
aaagtacaatcatcaactgtgatccagaattgggaacagaaacagatggagcgctttaag
gatgctccatggggaccgagttctttgaaacttgtcgctgatttgaatcatgtcatcgag
gaagcttcaaaagttgactttatcaatctctatgaaactatcccactctctgcagttgat
aacttaaaggagctcaatatccaccgtcaaagacttgcaaattctcttgcatgtacaaaa
gtcagtaatttccgtgagcaattccgcaaagttttcgagcgaaagatgatagaacagcgt
ctgcagcatctcaagtatatcacttccaaggacaatatggccctgtatccggactattgc
aacaaactcgaagtcctacgtgagatgcactatattgatgagcaaaacaatatcaccatg
aagggaagggtggcatgtgaaatgggatcaaatgaactcattctcacggaaatcatcttt
cgcaatatcatttcgaatttggaaccggcagaaatttctgctctcctctcgggattggtg
tttcaggcaaagacagaagctactcccaatttaaccacgaatctcaaggaaggaattaag
atagttgaagcaattaatgatgaaatcttcaatcttgagcagaagcatcgggtttcaaca
tccttagatgctcaagcaaagccccatttgaattttggacttgtggaagtggtttacgaa
tggggaagggataaaccctttgccgatataaaagaactcactgatgtccaggaaggtatc
attgtgagatgcattcagcaacttcatgaaattcttctcaatattaaagatgcctcgaga
gtttttggtgatccggtgctacataaaaaaatggaagatgtctccaatgccatcaaaagg
gatattgtctttgcagctagtttgtacacgcaaaaagatgctggattaattgtatcttaa
DBGET
integrated database retrieval system
