Phlebotomus papatasi: 129805921
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Entry
129805921 CDS
T10447
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppap Phlebotomus papatasi
Brite
KEGG Orthology (KO) [BR:
ppap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppap03016
]
129805921
Enzymes [BR:
ppap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
129805921
Transfer RNA biogenesis [BR:
ppap03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129805921
Prokaryotic type
tRNA splicing ligases
129805921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
129805921
NCBI-ProteinID:
XP_055710146
UniProt:
A0A1B0D6J7
LinkDB
All DBs
Position
3:complement(79509293..79511119)
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AA seq
506 aa
AA seq
DB search
MVVRPYDEELKYIEKISPTCYRIKKGFQPNMNVEGCFYVNNALEKLMFEELRNACRPGQT
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMDDPNAIVSPGGVGFD
INCGVRLLRTNLFEKDVKPVQERLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYCEIQVVDEIFD
ASAASKMGVEETGQVCVMIHSGSRGFGHQVATDALVEMEKAMKRDKIETNDRQLACARIN
SPEGQNYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNIAKME
EHIVDGKQKRLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
QETFGSTCHGAGRALSRAKSRRNLDYVDVLNKLNEMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCFKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagtgcgtccctacgacgaggagctcaagtacattgagaaaatctccccaacatgc
taccggatcaagaagggatttcagcccaatatgaatgtcgagggatgcttctatgtcaac
aatgccctggagaagctaatgtttgaggaattgcgaaatgcttgtcgtcctgggcagact
ggtggcttcttgccgggcgtcaaacaaattgccaatgttgcagctcttccgggaattgtt
gggcgctccattggacttccggatattcattctggctatggctttgccattgggaatatg
gcagcttttgatatggacgatcccaatgcaattgtgtctcctggtggagtgggatttgac
ataaattgcggagttcgtctgctgagaacgaatctttttgagaaggatgtgaagccagtg
caagagagattggctcagagtctctttgatcatattcctgtgggtgttggctcaaagggg
atcattccgatgaatgccagggacttggaagaggctctggagatgggaatggattggtca
ctgagggaagggtatgtttgggctgaagacaaggaacactgtgaggaatatggtcgaatg
ctcaatgctgatccctcgaaggtcagtatgagggccaagaagcgaggtcttccacagctg
ggaacactcggagctgggaatcactactgcgagattcaggttgtggatgagatctttgat
gcttcggcagccagtaaaatgggcgtggaagaaactggtcaagtatgcgtgatgattcac
tcaggaagtcgaggttttggccatcaagtggcaactgatgccctcgtggagatggaaaag
gctatgaaacgggacaagattgagacgaatgaccggcagctggcctgtgctcggatcaac
agcccagaaggtcagaactacctcaaagccatggctgctgcggcaaattttgcctgggtc
aatcgcagttccatgactttcctcactcgtcaggcctttgccaaacaattcaatacaact
cccgatgatctggacatgcacgtcatctacgatgtctctcacaatatcgccaagatggag
gagcacatcgtggatgggaagcagaagcgtttgctggtgcacagaaaaggctctaccagg
gcttttccaccccatcatcccttaattcccgttgactaccagctcactggacaacctgtt
ctcattggcggcacaatgggcacttgcagctacgtcctgaccggcacggagcaaggaatg
caggaaactttcggatctacttgtcacggagcagggcgagctctatcgcgtgccaaatca
agaaggaatctcgactacgtcgatgtcctcaataaactcaatgaaatgggaatttccatc
cgtgtggcctctccaaagttagtcatggaagaggctccggagtcctacaagaatgtcacg
gatgtcgttaacacttgccatgctgctgggatcagcaaaaagtgcttcaaacttcgtcca
atcgccgtgatcaagggttga
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