Phlebotomus papatasi: 129807944
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Entry
129807944 CDS
T10447
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ppap Phlebotomus papatasi
Pathway
ppap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129807944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppap03019
]
129807944
03041 Spliceosome [BR:
ppap03041
]
129807944
03009 Ribosome biogenesis [BR:
ppap03009
]
129807944
03016 Transfer RNA biogenesis [BR:
ppap03016
]
129807944
Enzymes [BR:
ppap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129807944
Messenger RNA biogenesis [BR:
ppap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129807944
Spliceosome [BR:
ppap03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129807944
Complex C
U4/U6.U5 tri-SnRNP related factors
129807944
Ribosome biogenesis [BR:
ppap03009
]
Eukaryotic type
Pre-60S particles
Helicases
129807944
Transfer RNA biogenesis [BR:
ppap03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129807944
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
129807944
NCBI-ProteinID:
XP_055713535
LinkDB
All DBs
Position
3:45230946..45251516
Genome browser
AA seq
1021 aa
AA seq
DB search
MAEIDELFECFEDSQVQSEPQVPMVISDEAETKESTEESSGTKRPADYEENNSERTKKKA
HTESVLDDVSLDVLESRITIHVIDSPEACTHEVAVYPGQEYIPLEPLTGPPAKEYSFVLD
AFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAKSLSAKQRVIYTTPIKALSNQKYRE
FQEEFKDVGIVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKE
RGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCHIHKQPCHVVYTEFRPTPLQHYLF
PAGGDGIHLVVDEKGQFKEENFNVAMTVLQNAGDAAKGDQKGRKGGVKANSAGGTNIFKI
VKMIMERNFAPVIIFSFSKKDCEVYALQMAKLDLNTAEEKRLVDEVFNNAMDVLSDEDRK
LPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLLKALFATETFAMGLNMPARTVL
FSAPTKFDGKEFRWLTSGEYIQMSGRAGRRGLDDKGIVILMIDEKVSPAVGRQIVQGKPD
PINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPELYRKVQLKQKELEGIKV
KDEHVVSSYHNIRMHLNTLGEKFRNFITKPEYLVPFLQPGRMVKVQTEDHEFDWGIIVNF
KKQESKVNPLTSKTIVIVDVLLYVDDDYSKDSLPKPCPANKKGSVEVVPVLHTLIAKISS
LRVYYPTDLRPADNRRSVLKTIQEVKKRFPQGPPLLNPVNDMNIKEKEFIGIVEQIDQYE
KRLFSHPLHESPELDNLYTQFTQKVQIEADLKAAKSAFKEAKSLLQMDELKNRKRVLRRF
GYCTPADVIEFKGRVACELSSADELLITELIFNGIFNSLTTPQCVALLSCFVCDEKTSEQ
PKAAEELSGPLRQMQDLAKRIAKVSVECKLDLDEDQYLERFKTSMMDVILAWCKGSSFLD
ICRTTDLFEGSIIRCMRRLEELLRQMCQASKTIGDTGLENKFSEGIRLLKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaattgatgagttatttgagtgttttgaagacagccaagtgcagagtgaaccc
caggtacctatggtgatcagcgatgaggctgaaactaaggaatctaccgaggagtcttct
ggcacaaaacgtccggctgattatgaggaaaataatagtgaacgaacgaaaaagaaggca
catacagaatctgttctggacgacgtcagtttggacgtattggaatcccggataacaatt
cacgtgatagactctccggaagcctgtacacacgaggtagctgtgtaccctggccaggaa
tacatccctctggagcctcttacgggtcctccagccaaggaatactcttttgtgctagat
gcctttcagaaggaagcgatcttgtgcatagaaaacaatcagagcgttctcgtgtctgct
catacttcagccggaaagaccgttgtggctgagtatgccattgctaaatctctatctgcc
aagcagagagttatctacaccactcccatcaaagctctctccaatcagaagtacagggag
tttcaggaagagtttaaagatgtgggaatcgtaactggagacgttacgataaatccctcc
gcttcctgcttgatcatgactacagagattttgaggaatatgctctacagaggctcagaa
atcatgcgagaggtgggatgggtgatctttgacgagatccactacatgagagacaaggag
cgtggtgttgtgtgggaagagactctgattctccttccggacaatgttcactacgtcttc
ctctcagccacaattcccaatgctcgacaattcgccgagtgggtctgtcacattcacaaa
cagccttgtcatgtggtctacacagaattcagaccgacgcccctgcagcattatctgttc
ccggcaggaggagatgggatacatttggtggtcgatgagaagggacagttcaaggaggag
aatttcaatgtggccatgacagtgctgcagaatgcaggagatgccgccaaaggggatcaa
aagggcagaaagggtggagttaaggccaatagtgcaggagggaccaatatcttcaaaatt
gtaaagatgatcatggagagaaattttgctccagttattattttttccttcagcaaaaag
gattgcgaagtttatgctctgcaaatggccaagttggatctgaatacagcagaggagaag
aggcttgtggatgaggtgttcaacaatgccatggatgtgctgtcggatgaggatcggaaa
ttgcctcaggtggaaaatgttcttccgctgttgagacgaggaattggcattcatcatggt
ggactcttgccaattctgaaggagacaattgagattctgtttggagaaggcctcctgaag
gctctatttgctaccgaaacttttgccatgggtctcaatatgcccgccagaacggtttta
tttagtgctccaacaaagttcgatggaaaggaattccgatggttaacttctggggagtac
attcagatgtcagggagagcaggaagacgggggctcgatgacaagggaattgtcattttg
atgatagacgaaaaggtgtcaccggctgttgggaggcaaatagttcagggaaaaccagat
ccgattaattcagcctttcacttgacgtacaatatggtgctgaatttgctgagagtggaa
gaaataaatccggaatatatgctggagagatctttcttccagtttcagaatcaatcgtcc
attccggaattgtatcggaaggttcagttgaagcagaaagaattggaggggattaaggtt
aaggatgaacatgttgtatcttcatatcacaatattcggatgcacttgaatacgcttggg
gagaaatttaggaatttcataacaaaacctgagtatctggtgccatttttgcaacctgga
cgaatggtgaaggtacaaacggaagatcatgaatttgattggggaattattgtgaatttc
aagaagcaggaatcaaaagtgaatcctcttacgagtaaaaccattgtcattgtggatgtt
ttgctctatgttgatgatgattactcaaaagattccctcccgaaaccgtgtccggctaac
aaaaagggttccgtggaagttgttccggttcttcatacgcttattgccaaaattagctcc
ctcagagtctactatccaacggatctgcgaccagcggacaatcgacggagtgtccttaag
acaattcaagaggtaaaaaagagattcccccaaggacctcccctactcaatcccgtcaat
gatatgaacatcaaagagaaggaattcattgggattgtcgaacaaattgatcagtatgag
aagagactattttcccatcctctgcacgagtctccggaactcgataatctctatacgcaa
tttacgcagaaggttcaaattgaggcggatctcaaggcggccaagagcgctttcaaggag
gccaagagtctcttgcagatggacgagttgaagaacagaaaaagagtactcagacgtttt
ggctactgcactccggccgatgtgattgagttcaagggcagagtggcatgtgaactcagt
tcggcagatgaactgctaatcactgagttaattttcaatggtattttcaactccttgact
acgccacagtgcgtagcgttgctgagctgcttcgtatgcgacgaaaagacttcagagcaa
cctaaagccgcagaagaattgtcaggtcctttacggcaaatgcaggatttagctaagagg
atagctaaagtttcagtagagtgcaaattagatctggacgaagatcaatatctggagcgt
tttaagacatcgatgatggatgtcattctggcttggtgcaaaggatcgtcatttttggat
atttgcaggacaactgatctcttcgaaggctcaattattcggtgcatgaggcgtctggag
gaattgcttaggcaaatgtgccaagcatcgaaaacaattggagacactggattagagaac
aaattttccgaaggaatcagacttcttaagagagatattgtatttgccgcatcactctat
ctctaa
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