Phlebotomus papatasi: 129808789
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Entry
129808789 CDS
T10447
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19719
collagen type II alpha
Organism
ppap Phlebotomus papatasi
Pathway
ppap04512
ECM-receptor interaction
ppap04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ppap00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129808789
04518 Integrin signaling
129808789
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ppap00536
]
129808789
Glycosaminoglycan binding proteins [BR:
ppap00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129808789
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Pacifastin_I
VWC2L_2nd
VWC_Sas
CFC
Motif
Other DBs
NCBI-GeneID:
129808789
NCBI-ProteinID:
XP_055714620
LinkDB
All DBs
Position
5:complement(2603949..2623341)
Genome browser
AA seq
1446 aa
AA seq
DB search
MRHVCSVVVGALLLWGPASGEPKRKRLRSPQDRPPPELPHYDYEYPDEYDTYDAGHPATP
SPAPQPIVTPFSCHFNNSWYRDGDTFADGCRQCRCTAGKINCTSDLCTPAPARGPQGTSG
AQGESGLPGIPGEAGPAGPAPDLTPYTQQMAEVFASADKGPSSGVPFQYVQAQVGPAGQR
GPQGPQGPAGPQGFQGGRGEAGEPGPPGPVGPPGPRGLPGIPGKDGASGDDGEAGAPGAP
GPPGPRGLPGMPGLPGVKGHRGYSGAEGAKGDIGVPGEKGDTGGIGPLGPAGPIGPMGPR
GERGREGPPGPPGIRGIDGVAGPAGQPGSIGKSGPPGFPGAPGVKGDQGAVGPKGSQGLQ
GPRGEAGRPGHTGEPGQPGLPGRDGLAGEKGGTGSAGVAGPPGFPGARGQPGVAGQPGEV
GPRGAPGLPGDRGHKGDSGQKGDTGAPGPRGTPGAPGSDGPRGKRGMRGATGPQGPQGDR
GSPGMAGVPGPDGAIGPKGQTGDRGVQGIAGPKGTTGDTGPPGPQGLHGARGLPGRIGVA
GKPGIPGERGLPGADGKPGEQGPQGIQGLPGPIGMPGDKGFTGEPGKDGEAGAVGPPGPR
GDAGKEGLPGPPGPPGPQGHDGERGGAGPAGPRGFQGLPGQPGSAGSPGKDGQQGAAGHP
GPPGLAGMRGERGFPGERGPLGLPGAPGNRGETGQAGQDGLPGPPGAPGVKGHQGAPGIV
GLPGLRGLPGMTGEKGERGAAGLHGAEGAQGRPGEPGPQGPVGPAGPPGEPAERGEPGNA
GPPGERGAPGNPGERGPTGPVGAPGFPGPMGPAGMVGLKGDRGDAGPKGEQGATGGIGAP
GEPGLQGPMGLMGVKGARGEQGARGEVGLAGLPGRPGEPGQPGQPGNQGVPGPAGIPGSK
GSTGDSGRPGNVGNTGPPGPPGPDGIKGETGSIGPAGPVGHPGPPGVQGDRGMPGLPGGV
GPLGPRGPRGAPGEPGQPGKVGLAGPVGQAGMRGAQGPPGPAGEMGPEGRPGKPGPPGLA
GRTGDKGPQGAPGQQGAMGPPGMPGAPGVAGQKGHTGDRGPLGPIGPQGPEGPPGQRGKA
GPPGAEGAKGDQGESGRPGPKGHRGFSGLAGAPGPRGPSGDKGPQGNDGMPGKPGDQGNR
GPPGRDGQPGAPGGLGAPGARGPPGSDGRPGSPGAPGPPGPPGPAAEPLGYDTAALAALL
QSGSTKGPPDTQADEPMRLFATPSDRDAFMLKAYHHLKATIDKLKAPNGDRDAPARTCRD
LAVAHPKLPSGRYWIDPNAGDTKDAIEVYCDMIHRATCITASPSDFPEIVPDGSLWLSEL
GILPSYKSDSQQMAFLQLLSSRAEQNLTIHCIGHIVAFDSERDSFRRAVALLAWNDAEIT
ARGNPRLRYSILNDGCQHRDRGKWSSTTLSYVTTKTSRLPIVDISPRDDDLSNGRLRLNV
GNVCFS
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgcgccacgtgtgcagtgttgtggtgggtgcccttttgctttggggcccagcatcgggt
gaaccgaaacgcaaaagactccgaagtccacaggatcgaccaccacctgaactaccccac
tacgactatgaatatcccgatgagtatgatacctatgatgctggtcacccggcaacacca
tccccagccccacaacccattgtcacgcccttttcctgccacttcaacaattcatggtac
agagatggcgacacctttgccgatggatgtcgccagtgtcgctgtacggctggcaagatc
aattgcacatcggatttgtgtacaccggcaccggcacggggtccacagggaacatctggg
gcccagggtgaatcgggcttgcctgggattccgggtgaagcaggtccagctggtccagca
cccgatctcacaccgtacactcagcagatggccgaagtgtttgccagtgcagacaaagga
ccaagttccggtgtaccctttcagtatgtacaggctcaagtgggaccggcaggacagaga
ggtccacagggaccacagggaccggctggaccacaaggttttcagggtggcagaggtgaa
gctggtgaaccaggaccaccgggtccagtaggaccgcctggaccaaggggtctaccagga
atccccggcaaagatggcgcaagcggtgatgatggtgaagctggagctccaggtgcacct
ggaccacctggaccaaggggcctaccaggaatgccaggacttccaggtgtcaaaggtcac
agaggttacagcggtgctgagggggccaagggtgatattggtgtgccaggtgaaaagggg
gacacaggtggcattggacctcttggaccagctggaccaattggacccatgggaccacgt
ggtgaacgtggcagagaaggtccacccggaccacctggtatacgtggtattgatggtgtt
gccggtccagctggacaaccagggtcaattggcaaatctggtccgcctggtttccctggg
gcaccgggtgtcaagggggatcagggcgcagtgggtccaaagggttctcagggtctccag
ggaccccgtggtgaagctggaaggccgggacatactggtgaacccggtcaaccgggacta
ccaggtcgcgatggattggcaggtgagaaaggtggtacagggtcagctggcgtagctgga
ccaccaggttttcctggtgcccgtggtcagccaggtgttgccggacaaccgggtgaagtg
ggtccaaggggtgcacccggattacccggtgatcgtggccacaaaggtgattccggacag
aaaggtgataccggtgcaccaggaccaagaggcaccccaggggcaccaggtagtgatggt
ccacgcggtaagaggggcatgagaggtgctacgggtccacagggaccacaaggtgatcga
ggtagtccgggtatggccggtgttccgggtcccgatggtgcaattggtccaaaaggccag
actggcgatcgtggtgttcagggaatagctggaccaaagggaacaactggtgatactgga
ccaccaggaccacagggacttcatggtgctcgagggctaccaggtcgaattggtgttgct
ggcaaaccaggtattcccggtgaacgtggattgccaggagctgatggaaaaccaggtgaa
cagggaccacagggtattcagggtctacctggaccaattggtatgcccggtgataagggt
tttaccggtgaaccgggcaaagatggtgaggccggtgctgttggtccacctggtccaagg
ggtgatgctggaaaagaaggattgcctggaccacctggaccaccaggaccacaaggacat
gatggtgaacgtggtggtgctggaccagctggaccaagaggttttcagggtttacctggt
caaccgggtagtgcaggtagtccaggtaaggatggtcaacagggtgcagcaggacatcct
ggaccacctggactggcaggaatgcgtggtgaaaggggttttccaggcgaaaggggacca
ctaggcttacccggagcacccggaaaccgtggagagactggtcaagctgggcaggatgga
ctaccaggaccacctggagcaccaggtgtcaagggacatcaaggtgcacctggaattgtt
ggtctaccgggccttaggggtttacctggaatgactggggaaaagggtgagagaggtgct
gctggacttcatggtgctgaaggtgctcaaggacgtcctggtgaacctggaccacaggga
cctgttggtcctgctggtccaccaggtgaacctgcagaacgcggtgaacctggcaatgct
ggaccaccaggtgagagaggtgctccgggtaatcctggagaacgtggaccaactggtcct
gttggtgcacctgggtttcctggtcctatgggaccagccggaatggtcggtcttaaaggg
gacagaggtgatgctggaccaaagggtgaacagggtgctacaggtggcattggggcaccg
ggtgaaccaggtcttcagggtccaatgggtttgatgggtgttaagggtgcaagaggtgaa
cagggtgctagaggagaggttggattggctggtctaccggggcgtcctggtgaaccagga
cagccgggtcaaccgggcaatcagggtgttcctggaccagctggaattcctggtagtaaa
ggtagtactggagattctggtcgacctgggaatgttggtaatacaggaccaccaggacca
cctggacctgatggaatcaaaggtgaaacgggatctattggtccggctggaccggtaggg
catcctggtccgccaggtgtacagggtgatcgaggaatgccaggattaccgggtggcgtt
ggtccattgggaccgagaggaccaagaggagcaccaggagaacccggacagccaggaaag
gtgggtctagctggaccagttggtcaggcaggaatgcgcggtgctcagggaccaccagga
cctgctggagaaatgggtcctgagggacggccaggtaagccaggaccacctggtctggct
ggaaggaccggtgataagggaccacagggtgcacctggtcaacaaggtgctatgggacca
ccaggaatgcctggggcacctggagtggctggtcagaagggtcataccggtgatcgtgga
ccactgggtcccattggaccccaaggacccgaaggaccaccaggacagcgcggtaaagcc
ggtccacctggagctgagggtgcaaagggtgatcagggtgaaagtggcagacctggacca
aagggtcatcgtggatttagtggactagccggtgctccaggtcctcgaggtccatcaggc
gacaaaggaccacagggaaatgatggaatgcccgggaagccaggtgatcagggcaatcgt
ggaccaccgggtcgtgatggacagccaggtgcacctggtggtcttggggcaccaggtgcc
agaggtccacctggttcagatggacgtcccggtagcccaggcgcacccggaccaccagga
ccacctggaccggctgcagaaccacttggctatgatacagctgccctagcagcactccta
cagagtggcagcacaaaaggaccaccagatactcaagctgacgaaccaatgagactcttt
gccacaccatctgatcgagatgccttcatgctaaaagcctatcaccatctaaaagccaca
attgacaaactaaaagcaccaaatggcgatagagatgctccagcacgaacatgccgggac
ctagccgtagcccatcccaaattaccatccggacggtactggatagatccaaatgccgga
gataccaaagacgccattgaagtctactgtgacatgatacaccgagcaacatgtatcact
gcatcaccatctgatttcccagaaatcgttccagatggtagtctctggttatcagaatta
ggaatactaccatcgtacaaatccgattcccaacaaatggcattcctccaactgctatca
tcgagagcagaacaaaatctaacaattcactgtatcggccatattgtagcatttgacagt
gaacgtgatagttttcgtcgtgccgtggcacttttggcatggaatgatgccgaaataact
gccagaggtaatccaaggttacgctacagtatcctaaatgatggttgtcagcatagagat
cggggaaaatggagtagtacaactctgagttatgtcacgactaaaacatcgagactacca
attgttgacattagtccaagagacgatgatctatcaaatggacgattgcgcctaaatgta
ggcaatgtatgcttctcctag
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