Pectobacterium parmentieri RNS 08-42-1A: A8F97_01710
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Entry
A8F97_01710 CDS
T04513
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Pathway
ppar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
A8F97_01710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppar03400
]
A8F97_01710
Enzymes [BR:
ppar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
A8F97_01710
DNA repair and recombination proteins [BR:
ppar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A8F97_01710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
nSTAND3
AAA_16
Herpes_Helicase
DEAD
AAA_28
UvrD_C
T2SSE
CbiA
PhoH
ResIII
MukB
FtsK_SpoIIIE
DUF87
SRP54
AAA_17
AAA
TrwB_AAD_bind
TraI_hel_assoc_N
Zeta_toxin
NTPase_1
AAA_24
ATPase
Motif
Other DBs
NCBI-ProteinID:
AOR57629
UniProt:
A0A8B3FD93
LinkDB
All DBs
Position
395112..396968
Genome browser
AA seq
618 aa
AA seq
DB search
MIVLLEMAQARRLLRPLDIQFARMLADETQPDLLLAAACLSAHSGAGHVCLPLGNLQAQT
LFDGRDPELAQQLLAGVGLNTAAAWQQRLLTSDAVSDGSKPTPLVLQGEKLYLQRSWQSE
GRVAQFIASERDTVSADEPAIRAVLDRLFPDAGEEIDWQKVAAAVALTRRIAIISGGPGT
GKTTTVAKLLAALIELNTGEALRIQLAAPTGKAAARLTESLGLALHRLAVDQTQREAFPQ
EATTLHRLLGAVTDSQRLRHHQENPLHLDVLIVDEASMVDLPMMANVIAALPAQARIIFL
GDRDQLASVEAGAVLGDICRFAEAGYSRGRTQQLQRLTGCMLDGSGPEGQTTVGDSICLL
RRSYRFDPHSGIGQLALAVNGGDEARVRAVLNGEFADITCSPLAEAEEYQVMLAQCVEGY
RDYLQLITVGAPPDAVLLAFQRYRQLCALREGPFGVAGLNQRIEQALHQSGLIQRSRNPL
NRWYPGRPVMIERNDAALGLFNGDIGIAMMGENRELRVFFPLPNGETKDVTPSRLPPHET
AYAMTVHKSQGSEFDHTALVLPNHYLPVLTRELVYTAITRARQRLSLYTDVRILCRAVKT
PTQRYSGLEERISALMGH
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgattgtcttgcttgaaatggcgcaggcgcggcggttgctgcgcccgctggatatacag
tttgccagaatgctggcagatgagacgcagcccgatctgctgctggcggcggcctgcctg
agtgcacattcgggagcgggacacgtgtgtttacctctgggaaatttgcaagcacagacg
ctgtttgatggccgcgatcctgaactggcacagcagttgctcgcgggagttgggctaaac
acggctgccgcctggcaacagcgtttgctgacgtccgatgccgttagcgacggtagcaaa
ccgacgccgctggtgctgcaaggtgaaaagctttatttacagcgtagctggcagagtgag
ggccgcgtggcgcagttcattgccagtgaacgcgatacggtatcggctgatgaaccggcg
atccgggcagtgctggatcggctgtttcctgacgcgggcgaagagattgactggcaaaaa
gtggccgccgccgttgccttgacgcgccgtattgcgattatttctggtggtccgggaacg
gggaaaaccacgacggttgccaagctgttggcggcgctgattgagttgaatacgggagag
gcgttacgtattcaattggctgcgcctactggaaaggcggccgcacggctaacggaatca
ttggggctggcattgcaccgtctggcggtggatcagacgcagcgagaggcgtttccacag
gaagcgacaacactgcatcggcttttaggcgcggtgacggatagccagcggctgcgtcac
catcaggaaaatccactgcatctggatgtgctgattgtggatgaggcgtcgatggtcgat
ctgccgatgatggcgaatgtgatcgccgcgcttccggcacaggcccgaattatctttctg
ggtgaccgcgatcagctagcgtccgtcgaggcgggggcggtgttaggtgacatctgccgt
tttgccgaggctggctatagccgtggacgaacgcagcaattgcagcgcctgacgggctgt
atgctggatggaagcggtcctgaagggcagacgacggtgggtgacagtatctgcctgtta
cgccgcagctaccgcttcgatccgcattccggtattgggcaactggcgctggcggtgaac
ggtggcgatgaggctcgcgtgcgtgcggtgctgaacggcgagtttgccgatatcacctgt
agtccgttagccgaagctgaagagtatcaggtgatgttggcgcagtgtgtcgaggggtat
cgtgattatctacagcttatcactgtgggagcgccgccggatgcagtgttacttgccttc
cagcgttatcgtcaactgtgtgcgttgcgtgaagggccgtttggcgtagccggtctcaat
cagcgtatcgagcaggctttgcatcagtctgggctgattcagcgcagccgcaatccgctt
aaccgctggtatcccggccgaccggtgatgattgagcgtaatgatgccgcgttgggtctg
tttaatggtgatatcggtattgcaatgatgggagaaaacagggagctgcgcgtatttttc
cccttgccgaatggcgaaaccaaagatgttacgccaagccgtctgccgccgcatgaaacg
gcttatgcgatgacggtgcataaatcgcagggatcggagttcgatcatactgcgctagta
ctgccgaaccattacttacccgtgctgacccgagagttggtgtataccgccatcacgcgt
gcgcgccagcgtttgtcgctctataccgatgttcgcatactctgtcgggcggtgaaaacg
ccaacacagcgctatagcggcttggaagagaggattagcgcactaatgggacattga
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