Pectobacterium parmentieri RNS 08-42-1A: A8F97_02135
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Entry
A8F97_02135 CDS
T04513
Name
(GenBank) exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppar03400
]
A8F97_02135
DNA repair and recombination proteins [BR:
ppar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A8F97_02135
Archaeal homologous recombinant proteins
A8F97_02135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_29
Death_MADD
ABC_tran
cobW
AAA_21
SMC_N
nSTAND3
KYNU_C
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOR57711
UniProt:
A0A8B3FCM8
LinkDB
All DBs
Position
complement(505163..508846)
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNLNALKGEWKIDFTKEPFSSNGLFAITGPTGAGKTTLLDAICLALYHETPR
LGLLSASQNDLMTRDTAECLAEVEFEVKGVGYRAFWSQRRARNVPDGNLQSPKAELALIE
GGKILCEKLNDKKEMITQLTGLDFGRFTRSMMLSQGQFAAFLNAKADDRAELLEELTGTD
IYGLISEHVYDKHKQANIALSTLQARASGIQLLTDEQRQQVEVQLAELTQQEQQGNIERE
QALTTLRWFEQLTRQQTQLTNTQLQHASAESAIQQAKPQLDRLANGEPAEKLRPLHQERE
RYRQESLALTQQIEQLSGKQASEHTALTTLRQQEEKAEQGVIQHKQVQQQQELLINEQVV
PLDHRIATLQQQKNQQQDELAKTQLRLQADESKQTQIAAQQQQAKQLLEQIQAYRQQHAH
HQQWGEQLPLWRTQFLQLRQLQDEQQKLSQKQTQHTEQAAALQQEAATLTAQQHEQQTVV
DAARQQFIQHDEMRKNQEAHQPLAALRQRFNQLIDQQATRRQLATASDQFQRLHTRKQQH
LARQDEIQGHISQSEILRKQQQSDHEQRSQHLADLEMLYRQEERIVKLEAERQRLQAGEA
CPLCGSTEHPAIERYQALQPSETQKRLTARQQDVKQLTTALANTTAQLASLGQQREQLQQ
EIAQLDSEHQILLQQWQDVSERLQVNYTLEQQNETAAWLTQRETEEQDIRQHITAHEQLQ
KQWQESKDSLTVAEALQRELDQKTVLNTQQRTSLNDMQADTLQSQQNTQQRLAQHTQEIT
QTLANTNLPLPEATAQDDWLAQRDSEWQIWKTKEQDQSRLIPRLATLESDLQYLSHSVTE
TTQQLQAQQQQLEQRTALLNTNQQERLTLFGDRQIAAVREQLQRTSQQYDNALRLAQLAR
QQAETTLSRLTGELTRTQQQYEQSMHQRDSATERFTQALQQSAFADETTFLNALLAEQER
QTLQVWKEKLYQSLQQAAALHQQAERELLAHQQKRPTSLLEDATQEAVQQQLATLDETLH
FTVRQQGEIQRQLNDDRQQRQNQQDLLNEIAQSQQKYDDWSCLNTLIGSQSGHKFRKFAQ
GLTLDHLVYLANLQLSRLHGRYMLKRKPGDDLELLVVDTWQADAERDTRTLSGGESFLVS
LSLALALSDLVSHKASIDSLFLDEGFGTLDAETLDIALDALDNLNASGKTIGVISHVDAM
KERIPVQIKVQKVNGLGVSKLAPQYAV
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcagtctgcgcttaaagaatctcaacgcgctgaaaggcgaatggaagatc
gacttcacaaaagagccattttccagcaacggcttgtttgccattaccggcccaaccggc
gcaggaaaaaccacgctgttggatgccatctgtctggcgctgtaccatgaaacacctcgc
ttgggtctgctttccgccagccaaaatgatctgatgacccgcgacacggcagaatgtctc
gccgaggtagaatttgaggtgaaaggcgtgggataccgcgccttctggagccaacgtcgg
gcgagaaatgtcccagacggcaatttacagtcccccaaggccgagctcgcactcattgaa
ggcggcaaaatcctgtgtgaaaagctcaatgataagaaagagatgatcacacaactcacc
gggttagactttggccgtttcacacgttctatgatgctgtcgcaggggcagtttgccgcc
ttcctcaatgcgaaagccgacgaccgggcggaactgctggaagagctaaccggcacggac
atttacggcctgatttccgagcacgtctatgacaagcacaaacaggcaaacatcgcgttg
agcacgctacaggcacgcgcatcaggtattcagttgctgaccgatgagcagcgccagcag
gtggaagtccagcttgccgaactgacccagcaagagcaacagggcaacattgagcgtgag
caagcactgactacgctacgctggtttgagcaactgacgcggcagcaaacacagctcacc
aacacgcagttgcaacacgcaagtgccgaatccgccattcagcaggccaagccgcagctc
gacaggttagccaacggcgaaccagcagaaaaactgaggccgttacatcaggaacgagaa
cgttatcgacaggaatcccttgcgctcactcagcagattgaacaactgtcaggaaagcag
gcctctgagcacactgcgctgacaacgttacgccagcaggaagagaaagcagagcagggc
gttattcagcacaaacaggtgcagcagcagcaagagttattgatcaatgaacaagttgta
ccgcttgaccatcgtattgccacgctgcaacagcaaaaaaaccaacagcaggacgaactg
gcaaaaacacagcttcgcctacaagctgacgaaagcaaacaaacgcagatagcagcgcaa
caacagcaggccaaacaactgcttgaacagattcaagcttatcgccagcaacacgcacat
catcagcagtggggagaacaacttcccctgtggcgtacacagtttctgcaattgcgccag
cttcaggacgagcagcagaagctgagccaaaagcagacgcaacacaccgaacaagcggca
gcgctccaacaggaggctgcaacgctgacggcgcagcagcatgaacaacaaacggtcgtt
gatgcagcccgtcagcaattcatacaacacgatgaaatgcggaaaaatcaggaagcgcat
cagccgcttgcagctctacgccagcggtttaatcaactcatcgatcaacaagccacacgc
cggcagctcgcaacagccagcgaccagttccagcgccttcatacgcgtaagcagcagcac
ctcgccaggcaagacgagatacaagggcatatcagccaatcagaaatattacgaaaacag
cagcagtctgatcatgagcagcgcagccagcatttggccgatctggaaatgctgtaccga
caggaagaacgtatcgttaaactggaagccgaaaggcagcggctacaggccggagaagcg
tgccctctgtgcggctcaaccgagcatccagcgattgaacgctatcaggcgttacaaccg
tctgaaacccaaaagcgcctgacggcacgacagcaggacgtgaaacagttaacaacggcg
ctggcgaatacgaccgcacaactcgcctcgctggggcagcagcgggaacagttgcaacaa
gagatcgcacaactcgatagcgaacatcaaatcctgctgcaacagtggcaagatgtcagt
gagcgcttacaggttaactacacgttggaacagcagaatgaaaccgcagcctggcttacg
caacgcgagaccgaggagcaggacattcgacagcacattaccgcacacgagcagttgcaa
aaacagtggcaggaaagtaaggattcactgacggttgcagaagccctacagagggaactg
gatcagaaaactgtgctgaatacccagcaacgaacttcgctaaacgatatgcaggcagat
acccttcagtcgcagcaaaatacgcagcaacggctcgcgcagcacactcaggaaatcacg
cagacgctggcaaacacgaatctgcctcttccggaagccactgcacaggatgactggttg
gcacagcgcgacagcgagtggcaaatatggaaaaccaaagaacaggatcaatcccgctta
attccccggttagccacgctggaaagcgatcttcagtatctgagccacagcgtgaccgag
acaacgcagcaattacaggcgcagcaacagcaactggagcagcgcaccgctctgctcaat
acgaaccagcaggaacgactgacgcttttcggcgacaggcaaatcgccgcagtacgcgag
cagctacaacgaactagccagcaatatgataatgcgcttcggttagcgcaattagcacgt
cagcaggctgaaaccacgttgagccgcctgacgggagagctaacccgcacgcaacagcag
tatgagcagagcatgcatcaacgcgatagtgcgactgaacgattcactcaggctttgcag
caaagtgcttttgctgatgaaaccaccttcctgaatgcgctgcttgctgagcaggaacga
cagaccttgcaggtatggaaggaaaagctgtatcagagtttgcagcaggcagcagcactt
caccagcaggctgaacgggagctgctcgcccatcaacaaaagcgaccaacttctctgctg
gaagatgccacacaagaagcagtacagcagcagttggcaacgctggatgaaacgctgcat
ttcactgtgcggcagcagggagaaattcagcgtcaactgaacgacgatcgacaacagcgt
caaaatcagcaggatttgctcaatgagatcgcccaaagtcagcaaaagtatgacgactgg
agctgtcttaatacgctcatcggctcacaaagtgggcataaattccgtaagtttgcccag
gggctcaccttggatcatctggtttatctcgccaatctacagctctctcgtctgcacggg
cgctatatgttgaagcgaaaacccggtgacgatctggaactgctggtggtggacacctgg
caagcagacgccgaacgcgatacgcgcacgctgtccggcggcgagagctttctggtgagt
ctatcgctggcgctggcgttatccgatctggtcagccataaagccagcatcgactctctg
tttctggatgaaggcttcggcacgctagatgccgagacgctggatatcgcgctggatgcg
ctggataacctgaacgcctctggcaaaaccatcggcgtcattagccatgtcgacgccatg
aaggagcgtattccggtacagatcaaagtgcagaaggttaacggtctgggcgtcagcaag
ctagcaccgcagtatgccgtgtag
DBGET
integrated database retrieval system