Pectobacterium parmentieri RNS 08-42-1A: A8F97_05525
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Entry
A8F97_05525 CDS
T04513
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppar03016
]
A8F97_05525
Enzymes [BR:
ppar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A8F97_05525
Transfer RNA biogenesis [BR:
ppar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A8F97_05525
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AOR58361
LinkDB
All DBs
Position
complement(1243739..1245673)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGYGFLEADGQKSYFIPPPHMKKVMHGDRI
TATLHTEKDREIVEPETLIEPFLTRFVGRIHKKDDRLSITPDHPLLKEAIPCRAARDVTH
DFQEGDWAVAEMRRHPLKGDRGFHAELTQYITTGDDPLVPWWVTLSRHNLERSAPEIEAT
ERHDGELVREDLTALNFVTIDSASTEDMDDALYVQDNGDGSLQLTIAIADPTAYVDVGSE
LDNIARQRAFTNYLPGFNIPMLPRALSDDICSLHPNERRPVLACRVTIAADGSLGNDIHF
FAASIESKAKLAYDNVSDWLENQGEWQPQNEAIAEQIRLLHRLCLARSEWRTTHALVFKD
RPDYRFLLGEKGDVLDIVVEHRRIANRIVEESMIAANVCAAIVLRDKLGFGIYNVHNGFD
PASVEQAVAVLDTHGVQADAQTLLTLEGFCTLRRELDAQPTQFLDSRIRRFQSFAEVSTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQAAEKPQDDVTAQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDIRFNAEIIDVTRGGLRVRLLDNGAVAFIPSSFIHAVRDE
LVCSQDMGTLSVKGDVVYRQGETLDVLIAEVRLETRSIVAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaatccgctgcttgcacagctaaaacagcaacttcactctcagacaccg
cgtgttgaaggtgtcgtcaaaggaaccgataagggatatggctttcttgaagctgacgga
caaaaaagctacttcattccccctccacacatgaaaaaagtgatgcacggtgaccggatt
accgccaccctgcatacggaaaaagatcgggaaattgtcgaaccagaaacgctgatagaa
cctttccttacccgttttgttggacgcatccacaaaaaggacgatcgactatccattacg
cctgaccacccgttgctgaaagaagcgattccttgccgcgccgcgcgcgatgtgacgcac
gattttcaggaaggcgattgggcagtagccgaaatgcgccgccacccattgaaaggtgac
cgtggtttccatgccgaactgacgcagtacatcaccacgggcgacgacccgctggtgccg
tggtgggtgacattgtcacgccataatctggagcgttctgccccagaaatcgaagcgact
gaacgccatgacggcgaactggtccgtgaagatctaacggcactgaactttgtcaccatc
gacagcgccagcaccgaagatatggacgatgcactctatgtgcaggacaacggtgatggt
tcactgcaattaactatcgctatcgccgatccaaccgcctatgtagatgtaggcagcgag
ttggacaacattgcacgtcagcgtgcctttaccaactatttgcccggcttcaacatcccg
atgctgccacgcgcgctgtcggacgatatctgttccctacacccgaacgagcgtcgccct
gtcctcgcctgccgcgtgacgattgccgccgatggttcactgggtaacgatatccacttc
tttgccgcctcgatcgaatccaaagccaaattagcgtatgacaacgtctctgactggctg
gagaatcaaggcgaatggcagccacaaaacgaggctatcgcggaacaaatccgtttgttg
caccgtctctgtctggctcgcagtgaatggcgcaccacgcatgctctggtgtttaaagat
cgcccggattaccgcttcctgctgggtgaaaaaggcgacgtgttggatatcgtggttgaa
caccgccgcatcgccaaccgtattgttgaagaatccatgattgccgccaacgtctgtgcg
gcgattgtgctgcgcgataagctgggtttcggcatctataacgtgcacaacggtttcgat
cctgcttcggttgaacaagcggttgctgtactggatacacatggcgttcaggccgatgcg
cagacgcttctgacactggaagggttctgtacgctgcgccgcgagctggatgcccagccg
acgcagttcctcgatagccgtattcgtcgcttccagtctttcgcggaagtgagcaccacg
ccagggccacattttggtctggggctggaagcctatgccacctggacatccccgatccgt
aaatacggcgatatggtgaaccaccgtttgctgaaagcggtgattaccggacaggctgcg
gaaaaaccgcaggatgacgtcacggcacaactggccgaacgccgtcgccttaaccgcatg
gctgagcgcgatgtcggcgactggctgtacgcacgctacctcaaagataaagctggcacg
gatattcgcttcaacgcggaaatcattgatgtcacacgcggcggcctgcgcgttcgcctg
ttggataacggcgcagtggcgtttatcccgtcctcctttatccatgccgtgcgtgatgag
ttagtgtgtagtcaggatatgggcaccctctcggtgaaaggcgacgtggtttatcgtcag
ggagagacgctggacgttctcatcgctgaagtacgtctggaaacccgcagcatcgtggca
aaacctgccgcataa
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