Pectobacterium parmentieri RNS 08-42-1A: A8F97_07050
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Entry
A8F97_07050 CDS
T04513
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppar
Pectobacterium parmentieri RNS 08-42-1A
Brite
KEGG Orthology (KO) [BR:
ppar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppar03032
]
A8F97_07050
03400 DNA repair and recombination proteins [BR:
ppar03400
]
A8F97_07050
Enzymes [BR:
ppar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
A8F97_07050
DNA replication proteins [BR:
ppar03032
]
Prokaryotic type
DNA Topoisomerases
A8F97_07050
DNA repair and recombination proteins [BR:
ppar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
A8F97_07050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
AOR58663
UniProt:
A0A8B3F6Y3
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Position
complement(1596537..1599137)
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AA seq
866 aa
AA seq
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MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHVRDLPTSGSASKKSADSTTKDKTKKKV
KKDEKSALVNRMGVDPYHGWKANYEILPGKEKVVSELKTLAENADHIYLATDLDREGEAI
AWHLREIIGGDDRRFSRVVFNEITKNAITQAFEKPDTLNIDRVNAQQARRFMDRVVGYMV
SPLLWKKIARGLSAGRVQSVAVRLIVDREREIKAFVPEEYWELHADLLAGSDIQLQMQVT
HHNGKPFKPVNKDQTHAAVSLLENARYIVADREDKPTSSKPGAPFITSTLQQAASTRLGF
GVKKTMMMAQRLYEAGYITYMRTDSTNLSQDALTMVRGYIGEEFGKRYLPEAAIAYSSKE
NSQEAHEAIRPSDVGVLADSLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLIVEAAD
YQLRAKGRTLRFDGWTKVMPALRKNDEDRTLPTVAVGEALSLQKLLPGQHFTKPPARYSD
ASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMN
YDFTARMESRLDQVANNQAEWKAVLDEFFNEFSQQLEKAEQDPEEGGMRPNAMVLTSIDC
PTCSRQMGIRTASTGVFLGCSGYALSPKERCKTTINLIPETEVLNVLEGDEAETNALRAR
RRCEKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIETGEFRIKGYDGPIVECEKCGSEMH
LKMGRFGKYMSCTGETCSNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGV
FLAANTFPKSRETRAPLVEELVRFKDRLPEKLRYLADAPEVDKDGNKTQVRFSRKTKQQY
VSSEKDGKATGWSAFYIDGKWVEGKK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgtcgagtccccggcaaaagccaaaacgatcaataagtat
ttaggcaatgactacgtggtgaaatccagcgtcggtcatgtacgcgatttgccgacaagt
ggctcagccagtaaaaagagcgcggactcaacgactaaagataaaacgaaaaagaaagtc
aaaaaggatgaaaaatccgcgctagttaatcgtatgggcgtcgatccttatcatggctgg
aaagctaactacgaaatcctgccgggtaaggagaaggttgtttccgaactaaaaacgctg
gcggaaaatgctgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccatt
gcctggcacctgcgggaaattattggtggtgacgatcggcgtttcagtcgcgtagtgttt
aacgaaatcacgaaaaatgccattacacaggcgtttgaaaaaccagacacgttgaatatt
gaccgcgttaatgcacagcaggcgcgtcggtttatggatcgcgtggtgggttacatggtt
tccccgctgttgtggaaaaagattgcgcgtggcctgtctgccgggcgtgtgcagtcggtt
gcagtgcgcctgattgtcgatcgtgagcgcgaaattaaagcgttcgtgccggaagaatat
tgggaattgcacgccgacttattggcgggcagtgatattcaactgcaaatgcaggtaacg
catcacaacggcaaaccgtttaagcccgttaacaaagatcaaacgcatgcggcggtcagc
ctgcttgagaatgcacgctatatcgttgctgaccgcgaagataagccgactagcagcaaa
cccggtgcgccgttcattacgtcaacgctgcaacaggctgccagtacacgtcttggtttt
ggtgtgaaaaagaccatgatgatggcgcagcgtctgtacgaagcgggctacattacctat
atgcgtaccgactccacgaacctcagtcaggatgcgttgacgatggtgcgtggctatatc
ggcgaagaattcggcaagcgctatctgccggaggcggcaatcgcctacagcagcaaagaa
aattcacaggaagcgcacgaagccattcgaccttccgatgtaggtgtgctggctgacagc
ctgaaggatatggaagccgatgcgcagaagctgtatcagttgatctggcgtcagttcgtc
gcctgtcaaatgacgccagcgcaatacgactccaccacgctaatcgtggaagccgcagat
tatcaactgcgtgcaaaaggccgaacgctgcgttttgatggctggacgaaagtcatgcca
gcgctgcgtaagaatgatgaagatcgcacgttgccgaccgtggccgtaggtgaagcatta
tcactacagaaactgctgccagggcaacacttcaccaaaccaccggcacgttacagcgat
gcatcgctggttaaagagctggaaaaacgcggtattggtcgtccttctacctacgcctcg
attatttcaaccatccaggatcgtggctatgtccgggtggaaaaccgccgtttctacgcc
gagaagatgggtgaaattgttaccgatcggctggaagaaaacttccgcgaattgatgaat
tacgatttcaccgcgcggatggaaagccgtctcgatcaggtcgccaataatcaggctgaa
tggaaagccgtactggatgagttcttcaatgaatttagccagcagttggaaaaggcagaa
caggaccctgaagaaggcggcatgcggcccaatgcgatggtgttgaccagcattgactgc
ccgacctgctctcgtcaaatgggtattcgtactgccagtactggggtgtttctgggttgt
tccggctatgcactgtcgccgaaagagcgctgtaaaaccacgatcaatctgataccagaa
actgaagtgctgaatgtgttagaaggcgatgaagccgaaactaacgcactgcgtgctcgt
cgtcgctgtgaaaaatgtggtacggcgatggacagctacctgattgataaccagcgtaaa
ctgcacgtttgcgggaataacccagcctgtgatgggtatgagatcgaaacgggcgagttc
cgtatcaagggctatgatgggccgatcgttgagtgtgagaaatgtggttccgaaatgcat
ctcaaaatgggacgcttcggtaaatacatgtcatgcaccggcgaaacgtgcagtaacacg
cgtaagatcttgcgtaatggcgatgttgcgccaccgaaagaagatccggtgccgttgcct
gagctgccttgcgagaagtctgatgcctatttcgtattgcgcgacggcgctgcgggagta
ttcctcgcggccaatacgttcccgaaatctcgtgaaacgcgggcaccactggtagaggaa
ctggtgcgatttaaagatcgcttgccggagaaactgcgctatttggccgatgccccggag
gtcgataaagacggcaataaaacgcaggtgcgtttcagccgtaagaccaaacagcaatat
gtctcgtcagagaaagacggcaaggcaacgggctggtcggcgttttatattgacggaaaa
tgggttgaagggaagaagtaa
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